\documentclass[letterpaper]{book}
\usepackage{makeidx}
\usepackage{fancyhdr}
\usepackage{graphicx}
\usepackage{float}
\usepackage{alltt}
\usepackage{doxygen}
\usepackage{times}
\ifx\pdfoutput\undefined
\usepackage[ps2pdf,
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\else
\usepackage[pdftex,
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            colorlinks=true,
            linkcolor=blue
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\makeindex
\setcounter{tocdepth}{1}
\setlength{\footrulewidth}{0.4pt}
\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.2.3}\\
\vspace*{0.5cm}
{\small Thu Feb 21 18:41:04 2002}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation}
\label{index}\hypertarget{index}{}\input{index}
\chapter{Compound Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Class Documentation}
\input{struct__CLI_Control}
\include{struct__CLI_File}
\include{struct__CLI_KeyDef}
\include{struct__CLI_KeyList}
\include{struct__CLI_Parm}
\include{struct__CLI_ParmDef}
\include{struct__CLI_Qual}
\include{struct__CLI_QualDef}
\include{struct__CLI_Syntax}
\include{struct__CLI_Tokens}
\include{struct__CLI_Valu}
\include{struct__CLI_VerbDef}
\chapter{File Documentation}
\input{CLI_clearFiles_c}
\include{CLI_clearTokens_c}
\include{CLI_command_c}
\include{CLI_getValue_c}
\include{CLI_indirect_c}
\include{CLI_parse_c}
\include{CLI_parseValue_c}
\include{CLI_present_c}
\include{CLI_prvdefs_h}
\include{CLI_pubdefs_h}
\include{CLI_report_c}
\include{CLI_squeeze_c}
\include{CLI_syntax_c}
\printindex
\end{document}