\documentclass[letterpaper]{book}
\usepackage{makeidx}
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\usepackage[utf8]{inputenc}
\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{3}
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\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.5.8}\\
\vspace*{0.5cm}
{\small Tue Nov 29 19:46:40 2011}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation}
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{Class Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
\input{dir_0d6ca82c0abeffd25cfbbda7829bb87d}
\include{dir_dba7dbdd98a410453b8a0d72b38b550d}
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\include{dir_a35e258b5d69df8f0032bf20c85d880d}
\chapter{Class Documentation}
\input{struct__APD__dtx}
\include{union__APE__cv}
\include{struct__APE__cv__ui}
\include{struct__APE__etx}
\include{struct__BA}
\include{struct__BFU}
\include{struct__BTE__compressed}
\include{struct__BTREE}
\include{struct__BTREE__node}
\include{struct__BW__vector}
\include{union__CodesSummary}
\include{struct__CodesSummary__f}
\include{union__DeltaInfo}
\include{struct__DeltaInfo__bf}
\include{union__DeltasSummary}
\include{struct__DeltasSummary__f}
\include{struct__FCS__checksum}
\include{struct__HDE}
\include{struct__HDE__assay}
\include{struct__HEAP}
\include{union__HistCore}
\include{struct__HistCore__f}
\include{union__HistLimits}
\include{struct__HistLimits__f}
\include{struct__HUFF__code}
\include{union__HUFF__dinfo}
\include{struct__HUFF__dlist}
\include{struct__HUFF__dtable}
\include{struct__HUFF__symbol__bf}
\chapter{File Documentation}
\input{__HUFF_8dox}
\include{APC_8h}
\include{APD_8c}
\include{APD_8h}
\include{apdtemplate_8h}
\include{APE_8c}
\include{APE_8h}
\include{APM_8c}
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\include{BA_8h}
\include{BFP_8h}
\include{BFU_8h}
\include{BTD_8c}
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\include{BTE_8c}
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\include{BTREE_8c}
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\include{BW_8h}
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\include{BWU_8c}
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\include{dprintf_8h}
\include{FCS_8c}
\include{FCS_8h}
\include{HDD_8c}
\include{HDD_8h}
\include{HDE_8c}
\include{HDE_8h}
\include{HEAP_8c}
\include{HEAP_8h}
\include{HUFF_8c}
\include{HUFF_8h}
\include{RLD_8c}
\include{RLD_8h}
\include{RLE_8c}
\include{RLE_8h}
\printindex
\end{document}