\documentclass[letterpaper]{book}
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\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{3}
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\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.5.8}\\
\vspace*{0.5cm}
{\small Wed Nov 21 18:52:15 2012}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation}
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{Class Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
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\chapter{Class Documentation}
\input{struct__FPM__Allocator}
\include{struct__FPM__AllocStat}
\include{struct__FPM__Control}
\include{struct__FPM__Pool}
\include{struct__FPM__PoolDsc}
\include{struct__FPM__PoolHist}
\include{struct__FPM__PoolStat}
\include{struct__RBM__Control}
\include{struct__RBM__Ring}
\include{struct__RBM__RingHist}
\include{struct__RBM__RingStat}
\chapter{File Documentation}
\input{FPM__control_8c}
\include{FPM__memory_8c}
\include{FPM__msgs_8c}
\include{FPM__msgs_8h}
\include{FPM__pool_8c}
\include{FPM__prvdefs_8h}
\include{FPM__pubdefs_8h}
\include{RBM__control_8c}
\include{RBM__memory_8c}
\include{RBM__msgs_8c}
\include{RBM__msgs_8h}
\include{RBM__prvdefs_8h}
\include{RBM__pubdefs_8h}
\include{RBM__ring_8c}
\printindex
\end{document}