\documentclass[letterpaper]{book}
\usepackage{makeidx}
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\usepackage[pdftex,
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\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{1}
\renewcommand{\footrulewidth}{0.4pt}
\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.4.4}\\
\vspace*{0.5cm}
{\small Wed Dec 5 08:23:44 2007}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation }
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{Data Structure Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
\input{dir_000008}
\include{dir_000005}
\include{dir_000002}
\include{dir_000000}
\include{dir_000001}
\include{dir_000004}
\include{dir_000007}
\include{dir_000003}
\include{dir_000006}
\chapter{Data Structure Documentation}
\input{struct__FILE__Control}
\include{union__FILE__NODEPAD}
\include{struct__FILE__NODEPAD__Bfl}
\include{struct__FILE__Upl__Info}
\include{struct__FILE__UploadCancel__Pkt}
\include{struct__FILE__UploadCancel__Prm}
\include{struct__FILE__UploadCommit__Pkt}
\include{struct__FILE__UploadCommit__Prm}
\include{struct__FILE__UploadData__Pkt}
\include{struct__FILE__UploadData__Prm}
\include{struct__FILE__UploadEPU__Pkt}
\include{struct__FILE__UploadEPU__Prm}
\include{struct__FILE__UploadStart__Pkt}
\include{struct__FILE__UploadStart__Prm}
\include{struct__ITC__QueueItem}
\chapter{File Documentation}
\input{FILE__cmddecl_8c}
\include{FILE__cmddefs_8h}
\include{FILE__cmdxtrn_8h}
\include{FILE__lcp_8h}
\include{FILE__lcp__command_8c}
\include{FILE__lcp__control_8c}
\include{FILE__lcp__msg_8c}
\include{FILE__lcp__msg_8h}
\include{FILE__lcp__private_8h}
\include{FILE__upl_8h}
\include{FILE__upl__cmd_8h}
\printindex
\end{document}