\documentclass[letterpaper]{book}
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\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.5.8}\\
\vspace*{0.5cm}
{\small Wed Nov 21 21:13:00 2012}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation}
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{Class Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
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\chapter{Class Documentation}
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\include{struct__QASC__sampleV0}
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\include{struct__QASC__summaryTableV0}
\include{union__QASC__summaryV0}
\include{struct__QASC__tileHistogramV0}
\include{struct__QSSP__ctx}
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\include{union__QSTD__sample}
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\include{struct__QSTD__statisticsV0}
\chapter{File Documentation}
\input{QASC__sample_8h}
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\include{QASC__samplePrint_8h}
\include{QSSP__ctx_8h}
\include{QSSP__ctxPrint_8c}
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\include{QSSP__point_8h}
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\include{QSSP__spanPrint_8h}
\include{QSTD__labels_8h}
\include{QSTD__sample_8h}
\include{QSTD__samplesPrint_8c}
\include{QSTD__samplesPrint_8h}
\printindex
\end{document}