\documentclass[letterpaper]{book}
\usepackage{makeidx}
\usepackage{fancyhdr}
\usepackage{graphicx}
\usepackage{multicol}
\usepackage{float}
\usepackage{textcomp}
\usepackage{alltt}
\usepackage{ifpdf}
\ifpdf
\usepackage[pdftex,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue,
            unicode
           ]{hyperref}
\else
\usepackage[ps2pdf,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue,
            unicode
           ]{hyperref}
\usepackage{pspicture}
\fi
\usepackage[utf8]{inputenc}
\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{3}
\renewcommand{\footrulewidth}{0.4pt}
\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.5.8}\\
\vspace*{0.5cm}
{\small Fri Sep 30 19:23:38 2011}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation}
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
\input{dir_0d6ca82c0abeffd25cfbbda7829bb87d}
\include{dir_dba7dbdd98a410453b8a0d72b38b550d}
\include{dir_ee84fdae8c5974266af70b370b642428}
\include{dir_079cea83bb84a57e3fb4a9086ab43e53}
\include{dir_e57cbafcec3dc22a75e8b09a5195a82e}
\include{dir_68f9b4c5f51a33df2df022d00af77a50}
\include{dir_d41d8f8a6990a792871512e17ad6aa02}
\include{dir_59beb1a9cd975dd8a89ae229316a1e39}
\include{dir_6802322f9d56b1ebee9197ade240400f}
\chapter{File Documentation}
\input{QCDM__macdefs_8h}
\include{QCDM__msgs_8c}
\include{QCDM__msgs_8h}
\include{QCDM__print_8c}
\printindex
\end{document}
