\documentclass[letterpaper]{book}
\usepackage{makeidx}
\usepackage{fancyhdr}
\usepackage{graphicx}
\usepackage{multicol}
\usepackage{float}
\usepackage{textcomp}
\usepackage{alltt}
\ifx\pdfoutput\undefined
\usepackage[ps2pdf,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue
           ]{hyperref}
\usepackage{pspicture}
\else
\usepackage[pdftex,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue
           ]{hyperref}
\fi
\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{1}
\renewcommand{\footrulewidth}{0.4pt}
\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.4.4}\\
\vspace*{0.5cm}
{\small Thu Jun 19 01:23:35 2008}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation }
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{Data Structure Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
\input{dir_000002}
\include{dir_000000}
\include{dir_000001}
\include{dir_000003}
\include{dir_000004}
\include{dir_000008}
\include{dir_000006}
\include{dir_000007}
\include{dir_000005}
\chapter{Data Structure Documentation}
\input{struct__HFC}
\include{struct__HFC__cfg}
\include{union__HFC__cfgPrms}
\include{struct__HFC__cfgSampler}
\include{struct__HFC__result}
\include{struct__HFC__stats}
\include{struct__HfcCfgAcd}
\include{struct__HfcCfgCal}
\include{struct__HfcCfgPrms}
\include{struct__HfcCfgTkr}
\chapter{File Documentation}
\input{HFC_8h}
\include{HFC__cfg_8h}
\include{HFC__cfgPrint_8c}
\include{HFC__cfgPrint_8h}
\include{HFC__def_8h}
\include{HFC__resultDef_8h}
\include{HFC__resultsPrint_8c}
\include{HFC__resultsPrint_8h}
\include{HFC__statsDef_8h}
\include{HFC__statsPrint_8c}
\include{HFC__statsPrint_8h}
\include{HFC__status_8h}
\printindex
\end{document}