\documentclass[letterpaper]{book}
\usepackage{makeidx}
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\usepackage{textcomp}
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\usepackage{doxygen}
\makeindex
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\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.4.4}\\
\vspace*{0.5cm}
{\small Thu Jun 12 01:48:46 2008}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation }
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{Data Structure Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
\input{dir_000008}
\include{dir_000005}
\include{dir_000002}
\include{dir_000000}
\include{dir_000001}
\include{dir_000003}
\include{dir_000004}
\include{dir_000007}
\include{dir_000006}
\chapter{Data Structure Documentation}
\input{struct__EFA__hdr}
\include{struct__EFA__hdrSeq}
\include{struct__EFA__hdrTimetone}
\include{struct__EFA__hdrTimetones}
\include{struct__EFA__services}
\include{struct__EFA__span}
\include{struct__EFC__classes}
\include{struct__EFC__definition}
\include{struct__EFC__sampler}
\include{struct__EFC__samplerClasses}
\include{struct__EFC__samplerPrescaleCounter}
\include{struct__EFC__samplerPrescaleCtx}
\include{struct__EFC__services}
\include{struct__EFC__sizes}
\include{struct__TFC__geometry}
\include{struct__TFC__geometryAcd}
\include{struct__TFC__geometrySkirt}
\include{struct__TFC__geometryTkr}
\include{struct__TFC__geometryTkrXY}
\include{struct__TFC__hit}
\include{struct__TFC__prj}
\include{struct__TFC__prjDir}
\include{struct__TFC__prjList}
\include{struct__TFC__prjNode}
\include{struct__TFC__prjPrms}
\include{struct__TFC__prjs}
\chapter{File Documentation}
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\include{EFA__def_8h}
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\include{EFC__samplerDef_8h}
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\include{TFC__geometryDef_8h}
\include{TFC__geometryPrint_8c}
\include{TFC__geometryPrint_8h}
\include{TFC__prjDef_8h}
\include{TFC__prjList_8h}
\include{TFC__prjPrint_8c}
\include{TFC__prjPrint_8h}
\printindex
\end{document}