\documentclass[letterpaper]{book}
\usepackage{makeidx}
\usepackage{fancyhdr}
\usepackage{graphicx}
\usepackage{multicol}
\usepackage{float}
\usepackage{textcomp}
\usepackage{alltt}
\usepackage{ifpdf}
\ifpdf
\usepackage[pdftex,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue,
            unicode
           ]{hyperref}
\else
\usepackage[ps2pdf,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue,
            unicode
           ]{hyperref}
\usepackage{pspicture}
\fi
\usepackage[utf8]{inputenc}
\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{3}
\renewcommand{\footrulewidth}{0.4pt}
\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.5.8}\\
\vspace*{0.5cm}
{\small Fri Nov 30 11:03:59 2012}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation}
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{Class Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
\input{dir_faa2cd28a5214f63dbf35ff5ffb50f20}
\include{dir_be2311a3ca8213c8ed9fa33b5ac07dbb}
\include{dir_0d6ca82c0abeffd25cfbbda7829bb87d}
\include{dir_dba7dbdd98a410453b8a0d72b38b550d}
\include{dir_ee84fdae8c5974266af70b370b642428}
\include{dir_3436d3f22b415814bc555cf1cfbe5785}
\include{dir_86deb40a75aac216e1d2146b8dc4b125}
\include{dir_b4f4df9fe1e8b4fe975ec4aa707f2a3e}
\include{dir_80fd6bfab77c31d6404283ef12064616}
\include{dir_270bf5be06db9d4b5a17a57b9c170498}
\include{dir_17d9558202534fc6daef08ede55e6184}
\chapter{Class Documentation}
\input{struct__TMR__usecs__nsecs}
\chapter{File Documentation}
\input{TMR_8c}
\include{TMR_8h}
\include{TMR_8sx-xxx-xxx_8c}
\include{TMR_8sx-xxx-xxx_8h}
\printindex
\end{document}
