\documentclass[letterpaper]{book}
\usepackage{makeidx}
\usepackage{fancyhdr}
\usepackage{graphicx}
\usepackage{multicol}
\usepackage{float}
\usepackage{textcomp}
\usepackage{alltt}
\usepackage{ifpdf}
\ifpdf
\usepackage[pdftex,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue,
            unicode
           ]{hyperref}
\else
\usepackage[ps2pdf,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue,
            unicode
           ]{hyperref}
\usepackage{pspicture}
\fi
\usepackage[utf8]{inputenc}
\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{1}
\renewcommand{\footrulewidth}{0.4pt}
\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.5.3}\\
\vspace*{0.5cm}
{\small Fri Aug 14 10:33:06 2009}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation }
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
\input{dir_0d6ca82c0abeffd25cfbbda7829bb87d}
\include{dir_dba7dbdd98a410453b8a0d72b38b550d}
\include{dir_ee84fdae8c5974266af70b370b642428}
\include{dir_845379ef775b5bcb53f8b4c01656040b}
\include{dir_12796abf1c022453f69f8c1976a8d65f}
\include{dir_9b722c5312f5bb3de572850cf3ec8a54}
\include{dir_2f42e5202bb222a1fdf005d54662c74c}
\include{dir_8dd97315c76dbade2ff815077ed78e8f}
\include{dir_484711b2b8617e5ac4d4a40360814384}
\chapter{File Documentation}
\input{cli_8c}
\include{cli_8h}
\include{PIG__msgs_8h}
\printindex
\end{document}