\documentclass[letterpaper]{book}
\usepackage{makeidx}
\usepackage{fancyhdr}
\usepackage{graphicx}
\usepackage{multicol}
\usepackage{float}
\usepackage{textcomp}
\usepackage{alltt}
\ifx\pdfoutput\undefined
\usepackage[ps2pdf,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue
           ]{hyperref}
\usepackage{pspicture}
\else
\usepackage[pdftex,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue
           ]{hyperref}
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\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{1}
\renewcommand{\footrulewidth}{0.4pt}
\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.4.4}\\
\vspace*{0.5cm}
{\small Thu Feb 12 01:13:18 2009}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation }
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{Data Structure Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
\input{dir_000002}
\include{dir_000000}
\include{dir_000001}
\include{dir_000003}
\include{dir_000008}
\include{dir_000005}
\include{dir_000004}
\include{dir_000007}
\include{dir_000006}
\chapter{Data Structure Documentation}
\input{struct__PIG__acd}
\include{struct__PIG__acd__bias}
\include{struct__PIG__arc__bias}
\include{union__PIG__cfg}
\include{struct__PIG__cruState}
\include{struct__PIG__dbState}
\include{struct__PIG__ebm}
\include{struct__PIG__ebmState}
\include{struct__PIG__epu}
\include{struct__PIG__evt__cfg}
\include{struct__PIG__gem}
\include{struct__PIG__pdu}
\include{struct__PIG__pduState}
\include{struct__PIG__pwrState}
\include{struct__PIG__siu__cfg}
\include{union__PIG__siu__union}
\include{struct__PIG__state}
\include{struct__PIG__tem}
\include{struct__PIG__twr__bias}
\chapter{File Documentation}
\input{bias_8c}
\include{cmdrsp_8c}
\include{const_8h}
\include{event_8c}
\include{pig_8h}
\include{pig__const__p_8h}
\include{pig__macro__p_8h}
\include{PIG__msgs_8c}
\include{PIG__msgs_8h}
\include{pig__p_8h}
\include{record_8c}
\include{siu__init_8c}
\include{state_8c}
\include{state_8h}
\include{structs_8h}
\include{utils_8c}
\printindex
\end{document}