\documentclass[letterpaper]{book}
\usepackage{makeidx}
\usepackage{fancyhdr}
\usepackage{graphicx}
\usepackage{multicol}
\usepackage{float}
\usepackage{textcomp}
\usepackage{alltt}
\usepackage{ifpdf}
\ifpdf
\usepackage[pdftex,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue,
            unicode
           ]{hyperref}
\else
\usepackage[ps2pdf,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue,
            unicode
           ]{hyperref}
\usepackage{pspicture}
\fi
\usepackage[utf8]{inputenc}
\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{3}
\renewcommand{\footrulewidth}{0.4pt}
\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.5.8}\\
\vspace*{0.5cm}
{\small Wed Nov 21 21:24:52 2012}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation}
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
\input{dir_97f39b1bd6171a67ea9b1b6f6ec9b0eb}
\include{dir_0d6ca82c0abeffd25cfbbda7829bb87d}
\include{dir_dba7dbdd98a410453b8a0d72b38b550d}
\include{dir_ee84fdae8c5974266af70b370b642428}
\include{dir_043a41fbd0160b907b28cc76170a2e5c}
\include{dir_1d700d9eea5f0e9835e9fcc73593d0ac}
\include{dir_52c8259aeaad45fa379082e26677ccaf}
\include{dir_7782aed121dd6fe0fdf6dcf206151d1f}
\include{dir_3d009d5692154663407cc627aeda5449}
\include{dir_f8af13d81daca918f30b730a4c589463}
\chapter{File Documentation}
\input{INT_8ih}
\include{INT_8ih_8vx-xxx-xxx}
\include{test__wut_8c}
\printindex
\end{document}