\documentclass[letterpaper]{book}
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\usepackage{doxygen}
\makeindex
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\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.5.3}\\
\vspace*{0.5cm}
{\small Thu Jul 9 13:47:50 2009}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation }
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{Class Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
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\chapter{Class Documentation}
\input{struct__CMX__Hierarchy}
\include{struct__CMX__Instance}
\include{struct__CMX__Interface}
\include{struct__CMX__Symbol}
\chapter{File Documentation}
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\include{CMX__interfaceCompare_8c}
\include{CMX__interfaceFind_8c}
\include{CMX__interfaceRead_8c}
\include{CMX__interfaceRecurse_8c}
\include{CMX__interfaceShow_8c}
\printindex
\end{document}