\documentclass[letterpaper]{book}
\usepackage{makeidx}
\usepackage{fancyhdr}
\usepackage{graphicx}
\usepackage{float}
\usepackage{alltt}
\usepackage{times}
\ifx\pdfoutput\undefined
\usepackage[ps2pdf,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue
           ]{hyperref}
\else
\usepackage[pdftex,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue
           ]{hyperref}
\fi
\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{1}
\setlength{\footrulewidth}{0.4pt}
\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.2.14}\\
\vspace*{0.5cm}
{\small Tue Mar 5 18:45:02 2002}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation}
\label{index}\hypertarget{index}{}\input{index}
\chapter{Data Structure Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Data Structure Documentation}
\input{struct__TCU__DefaultHard}
\include{struct__TCU__DefaultSoft}
\include{struct__TCU__FE__Chip}
\include{struct__TCU__Fpga__L1t}
\include{struct__TCU__Fpga__Tkr}
\include{struct__TCU__Instrument}
\include{struct__TCU__Map}
\include{struct__TCU__Plane}
\include{struct__TCU__RC__Chip}
\include{struct__TCU__Tower}
\chapter{File Documentation}
\input{TCU__access_8c}
\include{TCU__bitCopy_8c}
\include{TCU__init_8c}
\include{TCU__loadConfig_8c}
\include{TCU__loadFE_8c}
\include{TCU__loadFPGA_8c}
\include{TCU__loadRC_8c}
\include{TCU__mappings_8c}
\include{TCU__prvdefs_8h}
\include{TCU__pubdefs_8h}
\include{TCU__refreshFPGA_8c}
\include{TCU__resetFEsoft_8c}
\include{TCU__resetRCsoft_8c}
\include{TCU__resetTowerFront_8c}
\include{TCU__resetTowerHard_8c}
\include{TCU__resetTowerPower_8c}
\include{TCU__resetTowerSoft_8c}
\include{TCU__setFEDAC_8c}
\include{TCU__setFEmask_8c}
\include{TCU__setFEsplit_8c}
\include{TCU__setFEstrip_8c}
\include{TCU__setPlaneEnable_8c}
\include{TCU__setPlaneEnableBits_8c}
\include{TCU__setPlaneMask_8c}
\include{TCU__setPlaneMaskBits_8c}
\include{TCU__setTIRenable_8c}
\include{TCU__setTIRenableBits_8c}
\printindex
\end{document}