\documentclass[letterpaper]{book}
\usepackage{makeidx}
\usepackage{fancyhdr}
\usepackage{graphicx}
\usepackage{multicol}
\usepackage{float}
\usepackage{textcomp}
\usepackage{alltt}
\ifx\pdfoutput\undefined
\usepackage[ps2pdf,
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           ]{hyperref}
\usepackage{pspicture}
\else
\usepackage[pdftex,
            pagebackref=true,
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            linkcolor=blue
           ]{hyperref}
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\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{1}
\renewcommand{\footrulewidth}{0.4pt}
\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.4.4}\\
\vspace*{0.5cm}
{\small Mon Aug 27 02:38:20 2007}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{CMX Generated Documentation }
\label{index}\hypertarget{index}{}\input{index}
\chapter{Directory Hierarchy}
\input{dirs}
\chapter{Data Structure Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Directory Documentation}
\input{dir_000003}
\include{dir_000006}
\include{dir_000002}
\include{dir_000000}
\include{dir_000001}
\include{dir_000008}
\include{dir_000005}
\include{dir_000004}
\include{dir_000007}
\chapter{Data Structure Documentation}
\input{struct__ITC__QueueItem}
\include{struct__LCI__ABORT__Pkt}
\include{struct__LCI__CALIBRATE__Pkt}
\include{struct__LCI__CALIBRATE__Prm}
\include{struct__LCI__collection}
\include{struct__LCI__configuration}
\include{struct__LCI__consignment}
\include{struct__LCI__controller}
\include{struct__LCI__cue}
\include{struct__LCI__NOOP__Pkt}
\include{struct__LCI__runInfo}
\include{structLCI__acdInput}
\include{structLCI__acdValues}
\include{structLCI__calInput}
\include{structLCI__calValues}
\include{structLCI__cnfInput}
\include{structLCI__cnfItem}
\include{structLCI__cnfValues}
\include{structLCI__gemInput}
\include{structLCI__tkrInput}
\include{structLCI__tkrValues}
\include{structLCI__version}
\chapter{File Documentation}
\input{catechise_8c}
\include{catechise_8h}
\include{collect_8c}
\include{collect_8h}
\include{collect__p_8h}
\include{configure_8c}
\include{configure_8h}
\include{configure__p_8h}
\include{consign_8c}
\include{consign_8h}
\include{consign__p_8h}
\include{control_8c}
\include{control_8h}
\include{control__p_8h}
\include{cue_8c}
\include{cue_8h}
\include{cue__p_8h}
\include{enums__p_8h}
\include{lci_8h}
\include{LCI__cmd_8c}
\include{LCI__cmddecl_8c}
\include{LCI__cmddefs_8h}
\include{LCI__cmdxtrn_8h}
\include{LCI__msgs_8c}
\include{LCI__msgs_8h}
\include{macros__p_8h}
\printindex
\end{document}