Sender: LSF System <lsf@bullet0138>
Subject: Job 794819: <4FGL_J2146.5-1344_daily_bin1055> in cluster <slac> Done

Job <4FGL_J2146.5-1344_daily_bin1055> was submitted from host <rhel6-64f> by user <kocevski> in cluster <slac> at Mon Sep 27 06:25:54 2021
Job was executed on host(s) <bullet0138>, in queue <medium>, as user <kocevski> in cluster <slac> at Mon Sep 27 06:27:33 2021
</u/ki/kocevski> was used as the home directory.
</u/ki/kocevski> was used as the working directory.
Started at Mon Sep 27 06:27:33 2021
Terminated at Mon Sep 27 14:00:26 2021
Results reported at Mon Sep 27 14:00:26 2021

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J2146.5-1344_daily_bin1055 326.645 -13.7347 512784001 513043201 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J2146.5-1344 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time :                                   17.00 sec.
    Max Memory :                                 135 MB
    Average Memory :                             47.90 MB
    Total Requested Memory :                     -
    Delta Memory :                               -
    Max Swap :                                   -
    Max Processes :                              5
    Max Threads :                                19
    Run time :                                   847 sec.
    Turnaround time :                            27272 sec.

The output (if any) follows:

/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/font_manager.py:281: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment.
  'Matplotlib is building the font cache using fc-list. '
/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits
  PyFITSDeprecationWarning)  # noqa

Likelihood Analysis Tool
Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov)


Waiting 146 seconds before starting...
Proceeding.

Importing modules...
This is make3FGLxml version 01r0.
The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher.
This is make4FGLxml version 01r04.
The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher.

WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41).

/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead.
  warnings.warn(message, mplDeprecation, stacklevel=1)

WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41).

Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512826890_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512833087_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512839143_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512845144_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512851112_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512857069_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512863021_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512868960_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512874655_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512880206_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512885912_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512891619_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512897325_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512903032_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512908738_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512912609_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512918752_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512924797_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512930789_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512936754_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512942710_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512948662_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512954592_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512960184_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512965803_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512971509_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512977216_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512982922_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512988629_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512994335_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0512998298_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0513004414_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0513010449_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0513016433_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0513022396_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0513028351_v305.fit
Last server error 3011 ('No servers are available to read the file.')
Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0513034302_v305.fit
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
rmdir: failed to remove `/scratch/kocevski/794819': No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Done.


Performing analysis on: 4FGL_J2146.5-1344_daily_bin1055
RA = 326.645, Dec = -13.7347
tmin = 512784001, tmax = 513043201
emin = 100.0, emax = 100000.0
irfs = P8R3_SOURCE_V2
ROI = 12
zmax = 90

Fitting strategies:
Fix sources to their catalog values = True
Leave variable source normalizations free = True
Perform pre-fit where ALL sources are frozen to catalog values = False
Perform secondary fit with a free spectral index = True
Remove all catalog sources = False
Remove weak (TS < 2) catalog sources = False
Freeze Galactic component = False

Likelihood fit parameters:
Statistic: UNBINNED
Optimizer: MINUIT

Catalog: 4FGL

Repository Job = True

LAT data Source:
Data catalog

Updating database...

UPDATE lightcurve_data_v2 SET job_id='794819', job_status='RUN', time_executed='2021-09-27 13:55:40.301753', time_epoch_executed='1632776140.3' WHERE source_name='4FGL J2146.5-1344' and cadence='daily' and bin_id='1055'

Database successfully updated.
Done.

Creating custom output directory:
/scratch/kocevski/794819

Creating custom pfile directory:
/scratch/kocevski/794819/pfiles/

Retrieving the FT1 file...

Issuing command:
/afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=512784001.0 && nMetStart<513043201.0' /Data/Flight/Reprocess/P305

Issuing command:
/afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=512784001.0 && nMetStart<513043201.0' /Data/Flight/Level1/LPA

Retrieving 46 files...
Done.


Merging files...

[Errno 2] No such file or directory: '/scratch/kocevski/794819/gll_ph_p305_r0512826890_v305.fit'
Traceback (most recent call last):
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2835, in sourceAnalysis
    dataAvailibility_ft1 = dataCatalogQuery(FT1_options, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1938, in dataCatalogQuery
    FTmerge.ft1merge(dataCatalogFiles_local, mergedFile, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 59, in ft1merge
    tstart, tstop = _getTimeKeywords(infiles)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 40, in _getTimeKeywords
    header = pyfits.open(item)[extnum].header
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen
    lazy_load_hdus, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile
    lazy_load_hdus=lazy_load_hdus, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom
    fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper
    return function(*args, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__
    self._open_filename(fileobj, mode, overwrite)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename
    self._file = fileobj_open(self.name, IO_FITS_MODES[mode])
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open
    return open(filename, mode)
IOError: [Errno 2] No such file or directory: '/scratch/kocevski/794819/gll_ph_p305_r0512826890_v305.fit'


Retrieving the FT1 file...

Issuing command:
/afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=512784001.0 && nMetStart<513043201.0' /Data/Flight/Level1/LPA

Retrieving 46 files...
Done.


Merging files...

Merged file saved to:
/scratch/kocevski/794819/ft2_4FGL_J2146.5-1344_daily_bin1055.fits


UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1632776426.25', time_completed='2021-09-27 14:00:26.252663', job_id='794819' WHERE bin_id='1055' AND source_name='4FGL J2146.5-1344' AND cadence='daily';

Database successfully updated.

Error: could not find cmap file: /scratch/kocevski/794819/cmap_HighResolution_512784001_513043201_4FGL_J2146.5-1344_daily_bin1055.fits
Continuing... 

Cleaning up...

** Nuclear option initiated! **
rmdir /scratch/kocevski/794819


Analysis Complete.


Mon Sep 27 14:00:26 PDT 2021