/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 72 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599142284_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599147989_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599153694_v000.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599159399_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599165104_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599170809_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599253960_v003.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599266543_v000.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599272563_v003.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599278536_v000.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599284495_v000.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599290447_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599296396_v000.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599302239_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599307612_v000.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599313429_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599319133_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599324838_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599330543_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599336248_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599339797_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599346105_v000.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0599352174_v000.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft2/gll_pt_p202_r0599253960_v003.fit shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/783408': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J1917.7-6930_daily_bin1388 RA = 289.442, Dec = -69.5061 tmin = 599097601, tmax = 599356801 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='783408', job_status='RUN', time_executed='2021-09-22 15:49:47.471998', time_epoch_executed='1632350987.47' WHERE source_name='4FGL J1917.7-6930' and cadence='daily' and bin_id='1388' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/783408 Creating custom pfile directory: /scratch/kocevski/783408/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=599097601.0 && nMetStart<599356801.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=599097601.0 && nMetStart<599356801.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... [Errno 2] No such file or directory: '/scratch/kocevski/783408/gll_ph_p305_r0599142284_v001.fit' Traceback (most recent call last): File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2835, in sourceAnalysis dataAvailibility_ft1 = dataCatalogQuery(FT1_options, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1938, in dataCatalogQuery FTmerge.ft1merge(dataCatalogFiles_local, mergedFile, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 59, in ft1merge tstart, tstop = _getTimeKeywords(infiles) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 40, in _getTimeKeywords header = pyfits.open(item)[extnum].header File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile lazy_load_hdus=lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper return function(*args, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__ self._open_filename(fileobj, mode, overwrite) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open return open(filename, mode) IOError: [Errno 2] No such file or directory: '/scratch/kocevski/783408/gll_ph_p305_r0599142284_v001.fit' Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=599097601.0 && nMetStart<599356801.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... [Errno 2] No such file or directory: '/scratch/kocevski/783408/gll_pt_p202_r0599253960_v003.fit' Traceback (most recent call last): File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2861, in sourceAnalysis dataAvailibility_ft2 = dataCatalogQuery(FT2_options, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1943, in dataCatalogQuery FTmerge.ft2merge(dataCatalogFiles_local, mergedFile, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 133, in ft2merge tstart, tstop = _getTimeKeywords(infiles_arg) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 40, in _getTimeKeywords header = pyfits.open(item)[extnum].header File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile lazy_load_hdus=lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper return function(*args, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__ self._open_filename(fileobj, mode, overwrite) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open return open(filename, mode) IOError: [Errno 2] No such file or directory: '/scratch/kocevski/783408/gll_pt_p202_r0599253960_v003.fit' UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1632351414.46', time_completed='2021-09-22 15:56:54.464535', job_id='783408' WHERE bin_id='1388' AND source_name='4FGL J1917.7-6930' AND cadence='daily'; Database successfully updated. Error: could not find cmap file: /scratch/kocevski/783408/cmap_HighResolution_599097601_599356801_4FGL_J1917.7-6930_daily_bin1388.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/783408 Analysis Complete. Wed Sep 22 15:56:54 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 783408: <4FGL_J1917.7-6930_daily_bin1388> in cluster Done Job <4FGL_J1917.7-6930_daily_bin1388> was submitted from host by user in cluster at Wed Sep 22 15:45:54 2021 Job was executed on host(s) , in queue , as user in cluster at Wed Sep 22 15:48:26 2021 was used as the home directory. was used as the working directory. Started at Wed Sep 22 15:48:26 2021 Terminated at Wed Sep 22 15:56:55 2021 Results reported at Wed Sep 22 15:56:55 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J1917.7-6930_daily_bin1388 289.442 -69.5061 599097601 599356801 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J1917.7-6930 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ Successfully completed. Resource usage summary: CPU time : 13.11 sec. Max Memory : 108 MB Average Memory : 95.00 MB Total Requested Memory : - Delta Memory : - Max Swap : - Max Processes : 4 Max Threads : 8 Run time : 508 sec. Turnaround time : 661 sec. The output (if any) is above this job summary.