/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 174 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). number of points = 7436 number of fields = 30 RA_SUN column already exists. File will not be modified. shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/10487': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J1741.2+5739_daily_bin1184 RA = 265.323, Dec = 57.6587 tmin = 546220801, tmax = 546480001 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='10487', job_status='RUN', time_executed='2021-09-18 04:53:39.259500', time_epoch_executed='1631966019.26' WHERE source_name='4FGL J1741.2+5739' and cadence='daily' and bin_id='1184' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/10487 Creating custom pfile directory: /scratch/kocevski/10487/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=546220801.0 && nMetStart<546480001.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=546220801.0 && nMetStart<546480001.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... Checksum keywords updated successfully. Merged file saved to: /scratch/kocevski/10487/ft1_4FGL_J1741.2+5739_daily_bin1184.fits Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=546220801.0 && nMetStart<546480001.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... Merged file saved to: /scratch/kocevski/10487/ft2_4FGL_J1741.2+5739_daily_bin1184.fits Selecting the photons: time -p gtselect infile=/scratch/kocevski/10487/ft1_4FGL_J1741.2+5739_daily_bin1184.fits outfile=/scratch/kocevski/10487/ft1_filteredMKT_4FGL_J1741.2+5739_daily_bin1184.fits ra=265.323 dec=57.6587 rad=12.0 tmin=546220801.0 tmax=546480001.0 emin=100.0 emax=100000.0 zmin=0.0 zmax=90.0 evclass=128 evtype="INDEF" convtype=-1 phasemin=0.0 phasemax=1.0 evtable="EVENTS" chatter=2 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). Done. real 3.88 user 3.66 sys 0.20 No photons survived the gtmktime cut UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No photons survived the gtselect cut', time_epoch_completed='1631966097.76', time_completed='2021-09-18 04:54:57.759864', job_id='10487' WHERE bin_id='1184' AND source_name='4FGL J1741.2+5739' AND cadence='daily'; Database successfully updated. Adding sun position to ft2 file: /nfs/farm/g/glast/g/LCRepository/Repository/bin/sunpos /scratch/kocevski/10487/ft2_4FGL_J1741.2+5739_daily_bin1184.fits Selecting the good time intervals: time -p gtmktime scfile=/scratch/kocevski/10487/ft2_4FGL_J1741.2+5739_daily_bin1184.fits sctable="SC_DATA" filter="IN_SAA!=T && LIVETIME>0 && gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nogrb.gti',(START+STOP)/2) && (angsep(RA_SUN,DEC_SUN,RA_ZENITH,DEC_ZENITH)>115 || gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nosolarflares.gti',(START+STOP)/2))" roicut=no evfile=/scratch/kocevski/10487/ft1_filteredMKT_4FGL_J1741.2+5739_daily_bin1184.fits evtable="EVENTS" outfile="/scratch/kocevski/10487/ft1_filtered_4FGL_J1741.2+5739_daily_bin1184.fits" apply_filter=yes overwrite=yes header_obstimes=yes tstart=0.0 tstop=0.0 gtifile="default" chatter=3 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). This is gtmktime version HEAD Applying GTI filter: IN_SAA!=T && LIVETIME>0 && gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nogrb.gti',(START+STOP)/2) && (angsep(RA_SUN,DEC_SUN,RA_ZENITH,DEC_ZENITH)>115 || gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nosolarflares.gti',(START+STOP)/2)) real 0.50 user 0.34 sys 0.15 No photons survived the gtmktime cut UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No photons survived the gtmktime cut', time_epoch_completed='1631966098.32', time_completed='2021-09-18 04:54:58.317809', job_id='10487' WHERE bin_id='1184' AND source_name='4FGL J1741.2+5739' AND cadence='daily'; Database successfully updated. Generating the livetime cube: time -p gtltcube evfile="/scratch/kocevski/10487/ft1_filtered_4FGL_J1741.2+5739_daily_bin1184.fits" evtable="EVENTS" scfile=/scratch/kocevski/10487/ft2_4FGL_J1741.2+5739_daily_bin1184.fits sctable="SC_DATA" outfile=/scratch/kocevski/10487/ltcube_546220801_546480001_4FGL_J1741.2+5739_daily_bin1184.fits dcostheta=0.025 binsz=1.0 phibins=0 tmin=0.0 tmax=0.0 file_version="1" zmin=0.0 zmax=90.0 chatter=2 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). Working on file /scratch/kocevski/10487/ft2_4FGL_J1741.2+5739_daily_bin1184.fits .....................! real 12.06 user 11.64 sys 0.35 Generating the exposure map: time -p gtexpmap evfile=/scratch/kocevski/10487/ft1_filtered_4FGL_J1741.2+5739_daily_bin1184.fits evtable="EVENTS" scfile=/scratch/kocevski/10487/ft2_4FGL_J1741.2+5739_daily_bin1184.fits sctable="SC_DATA" expcube=/scratch/kocevski/10487/ltcube_546220801_546480001_4FGL_J1741.2+5739_daily_bin1184.fits outfile=/scratch/kocevski/10487/expmap_546220801_546480001_4FGL_J1741.2+5739_daily_bin1184.fits irfs="P8R3_SOURCE_V2" evtype="INDEF" srcrad=30.0 nlong=88 nlat=88 nenergies=10 submap=no nlongmin=0 nlongmax=0 nlatmin=0 nlatmax=0 chatter=2 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). The exposure maps generated by this tool are meant to be used for *unbinned* likelihood analysis only. Do not use them for binned analyses. Computing the ExposureMap using /scratch/kocevski/10487/ltcube_546220801_546480001_4FGL_J1741.2+5739_daily_bin1184.fits .....................! real 192.78 user 186.40 sys 5.72 Error: could not find cmap file: /scratch/kocevski/10487/cmap_HighResolution_546220801_546480001_4FGL_J1741.2+5739_daily_bin1184.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/10487 Analysis Complete. Sat Sep 18 04:58:23 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 10487: <4FGL_J1741.2+5739_daily_bin1184> in cluster Done Job <4FGL_J1741.2+5739_daily_bin1184> was submitted from host by user in cluster at Sat Sep 18 04:50:34 2021 Job was executed on host(s) , in queue , as user in cluster at Sat Sep 18 04:50:36 2021 was used as the home directory. was used as the working directory. Started at Sat Sep 18 04:50:36 2021 Terminated at Sat Sep 18 04:58:23 2021 Results reported at Sat Sep 18 04:58:23 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J1741.2+5739_daily_bin1184 265.323 57.6587 546220801 546480001 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J1741.2+5739 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ Successfully completed. Resource usage summary: CPU time : 236.00 sec. Max Memory : 309 MB Average Memory : 195.75 MB Total Requested Memory : - Delta Memory : - Max Swap : - Max Processes : 5 Max Threads : 21 Run time : 467 sec. Turnaround time : 469 sec. The output (if any) is above this job summary.