/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/font_manager.py:281: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment. 'Matplotlib is building the font cache using fc-list. ' /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 52 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/941335': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J1647.4-6438_daily_bin894 RA = 251.87, Dec = -64.6454 tmin = 471052801, tmax = 471312001 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='941335', job_status='RUN', time_executed='2021-09-15 12:57:35.826885', time_epoch_executed='1631735855.83' WHERE source_name='4FGL J1647.4-6438' and cadence='daily' and bin_id='894' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/941335 Creating custom pfile directory: /scratch/kocevski/941335/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=471052801.0 && nMetStart<471312001.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=471052801.0 && nMetStart<471312001.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... /bin/sh: fmerge: command not found /bin/sh: fmerge: command not found [Errno 2] No such file or directory: '/scratch/kocevski/941335/ft1_4FGL_J1647.4-6438_daily_bin894.fits' Traceback (most recent call last): File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2835, in sourceAnalysis dataAvailibility_ft1 = dataCatalogQuery(FT1_options, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1938, in dataCatalogQuery FTmerge.ft1merge(dataCatalogFiles_local, mergedFile, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 73, in ft1merge foo = pyfits.open(outfile) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile lazy_load_hdus=lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper return function(*args, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__ self._open_filename(fileobj, mode, overwrite) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open return open(filename, mode) IOError: [Errno 2] No such file or directory: '/scratch/kocevski/941335/ft1_4FGL_J1647.4-6438_daily_bin894.fits' Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=471052801.0 && nMetStart<471312001.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fcopy: command not found /bin/sh: fmerge: command not found [Errno 2] No such file or directory: '/scratch/kocevski/941335/ft2_4FGL_J1647.4-6438_daily_bin894.fits' Traceback (most recent call last): File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2861, in sourceAnalysis dataAvailibility_ft2 = dataCatalogQuery(FT2_options, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1943, in dataCatalogQuery FTmerge.ft2merge(dataCatalogFiles_local, mergedFile, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 153, in ft2merge updateTimeKeywords(outfile, tstart, tstop) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 48, in updateTimeKeywords foo = pyfits.open(fitsfile) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile lazy_load_hdus=lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper return function(*args, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__ self._open_filename(fileobj, mode, overwrite) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open return open(filename, mode) IOError: [Errno 2] No such file or directory: '/scratch/kocevski/941335/ft2_4FGL_J1647.4-6438_daily_bin894.fits' UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1631735884.83', time_completed='2021-09-15 12:58:04.834059', job_id='941335' WHERE bin_id='894' AND source_name='4FGL J1647.4-6438' AND cadence='daily'; Database successfully updated. Error: could not find cmap file: /scratch/kocevski/941335/cmap_HighResolution_471052801_471312001_4FGL_J1647.4-6438_daily_bin894.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/941335 Analysis Complete. Wed Sep 15 12:58:05 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 941335: <4FGL_J1647.4-6438_daily_bin894> in cluster Done Job <4FGL_J1647.4-6438_daily_bin894> was submitted from host by user in cluster at Wed Sep 15 12:50:40 2021 Job was executed on host(s) , in queue , as user in cluster at Wed Sep 15 12:50:54 2021 was used as the home directory. was used as the working directory. Started at Wed Sep 15 12:50:54 2021 Terminated at Wed Sep 15 12:58:07 2021 Results reported at Wed Sep 15 12:58:07 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J1647.4-6438_daily_bin894 251.87 -64.6454 471052801 471312001 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J1647.4-6438 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ Successfully completed. Resource usage summary: CPU time : 13.00 sec. Max Memory : 102 MB Average Memory : 55.33 MB Total Requested Memory : - Delta Memory : - Max Swap : - Max Processes : 4 Max Threads : 19 Run time : 432 sec. Turnaround time : 447 sec. The output (if any) is above this job summary.