/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 116 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/869409': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J1643.5-0646_daily_bin533 RA = 250.883, Dec = -6.7749 tmin = 377481601, tmax = 377740801 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='869409', job_status='RUN', time_executed='2021-09-15 08:32:22.161291', time_epoch_executed='1631719942.16' WHERE source_name='4FGL J1643.5-0646' and cadence='daily' and bin_id='533' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/869409 Creating custom pfile directory: /scratch/kocevski/869409/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=377481601.0 && nMetStart<377740801.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=377481601.0 && nMetStart<377740801.0' /Data/Flight/Level1/LPA Retrieving 36 files... Done. Merging files... Checksum keywords updated successfully. Merged file saved to: /scratch/kocevski/869409/ft1_4FGL_J1643.5-0646_daily_bin533.fits Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=377481601.0 && nMetStart<377740801.0' /Data/Flight/Level1/LPA Retrieving 40 files... Done. Merging files... Empty or corrupt FITS file Traceback (most recent call last): File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2861, in sourceAnalysis dataAvailibility_ft2 = dataCatalogQuery(FT2_options, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1943, in dataCatalogQuery FTmerge.ft2merge(dataCatalogFiles_local, mergedFile, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 133, in ft2merge tstart, tstop = _getTimeKeywords(infiles_arg) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 40, in _getTimeKeywords header = pyfits.open(item)[extnum].header File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile lazy_load_hdus=lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1040, in _readfrom raise IOError('Empty or corrupt FITS file') IOError: Empty or corrupt FITS file UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1631719960.23', time_completed='2021-09-15 08:32:40.231295', job_id='869409' WHERE bin_id='533' AND source_name='4FGL J1643.5-0646' AND cadence='daily'; Database successfully updated. Error: could not find cmap file: /scratch/kocevski/869409/cmap_HighResolution_377481601_377740801_4FGL_J1643.5-0646_daily_bin533.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/869409 Analysis Complete. Wed Sep 15 08:32:40 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 869409: <4FGL_J1643.5-0646_daily_bin533> in cluster Exited Job <4FGL_J1643.5-0646_daily_bin533> was submitted from host by user in cluster at Wed Sep 15 08:25:19 2021 Job was executed on host(s) , in queue , as user in cluster at Wed Sep 15 08:30:20 2021 was used as the home directory. was used as the working directory. Started at Wed Sep 15 08:30:20 2021 Terminated at Wed Sep 15 08:32:40 2021 Results reported at Wed Sep 15 08:32:40 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J1643.5-0646_daily_bin533 250.883 -6.7749 377481601 377740801 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J1643.5-0646 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ TERM_SWAP: job killed after reaching LSF swap usage limit. Exited with signal termination: 29. Resource usage summary: CPU time : 17.53 sec. Max Memory : 164 MB Average Memory : 74.86 MB Total Requested Memory : - Delta Memory : - Max Swap : 18706 MB Max Processes : 5 Max Threads : 15 Run time : 140 sec. Turnaround time : 441 sec. The output (if any) is above this job summary.