aklog: Couldn't determine realm of user:aklog: unknown RPC error (-1765328189) while getting realm /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 3 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277745561_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277751022_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277756800_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277762529_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277768258_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277773987_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277779716_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277783133_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277789566_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277795672_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277801715_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277807713_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277813697_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277819675_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277825650_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277831492_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277836832_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277842733_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277848462_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277854190_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277859919_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277865648_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277875597_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277899689_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277905666_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277911633_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277917385_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277928665_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277945852_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277951581_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277955445_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277961622_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277973710_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277979700_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0277997612_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0278003229_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0278008869_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0278031785_v305.fit shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/307828': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J1419.5+3821_weekly_bin64 RA = 214.894, Dec = 38.3657 tmin = 277689601, tmax = 278294401 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='307828', job_status='RUN', time_executed='2021-07-21 15:04:53.660224', time_epoch_executed='1626905093.66' WHERE source_name='4FGL J1419.5+3821' and cadence='weekly' and bin_id='64' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/307828 Creating custom pfile directory: /scratch/kocevski/307828/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=277689601.0 && nMetStart<278294401.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=277689601.0 && nMetStart<278294401.0' /Data/Flight/Level1/LPA Retrieving 107 files... Done. Merging files... [Errno 2] No such file or directory: '/scratch/kocevski/307828/gll_ph_p305_r0277745561_v305.fit' Traceback (most recent call last): File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2835, in sourceAnalysis dataAvailibility_ft1 = dataCatalogQuery(FT1_options, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1938, in dataCatalogQuery FTmerge.ft1merge(dataCatalogFiles_local, mergedFile, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 59, in ft1merge tstart, tstop = _getTimeKeywords(infiles) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 40, in _getTimeKeywords header = pyfits.open(item)[extnum].header File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile lazy_load_hdus=lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper return function(*args, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__ self._open_filename(fileobj, mode, overwrite) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open return open(filename, mode) IOError: [Errno 2] No such file or directory: '/scratch/kocevski/307828/gll_ph_p305_r0277745561_v305.fit' Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=277689601.0 && nMetStart<278294401.0' /Data/Flight/Level1/LPA Retrieving 107 files... Done. Merging files... Merged file saved to: /scratch/kocevski/307828/ft2_4FGL_J1419.5+3821_weekly_bin64.fits UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1626905951.92', time_completed='2021-07-21 15:19:11.919642', job_id='307828' WHERE bin_id='64' AND source_name='4FGL J1419.5+3821' AND cadence='weekly'; Database successfully updated. Error: could not find cmap file: /scratch/kocevski/307828/cmap_HighResolution_277689601_278294401_4FGL_J1419.5+3821_weekly_bin64.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/307828 Analysis Complete. Wed Jul 21 15:19:12 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 307828: <4FGL_J1419.5+3821_weekly_bin64> in cluster Done Job <4FGL_J1419.5+3821_weekly_bin64> was submitted from host by user in cluster at Wed Jul 21 15:00:42 2021 Job was executed on host(s) , in queue , as user in cluster at Wed Jul 21 15:04:38 2021 was used as the home directory. was used as the working directory. Started at Wed Jul 21 15:04:38 2021 Terminated at Wed Jul 21 15:19:12 2021 Results reported at Wed Jul 21 15:19:12 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J1419.5+3821_weekly_bin64 214.894 38.3657 277689601 278294401 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J1419.5+3821 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ Successfully completed. Resource usage summary: CPU time : 25.00 sec. Max Memory : 108 MB Average Memory : 103.97 MB Total Requested Memory : - Delta Memory : - Max Swap : - Max Processes : 7 Max Threads : 9 Run time : 874 sec. Turnaround time : 1110 sec. The output (if any) is above this job summary.