aklog: Couldn't determine realm of user:aklog: unknown RPC error (-1765328189) while getting realm /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 23 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527659286_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527665236_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527671123_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527676589_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527682321_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527693733_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527699440_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527733011_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527738969_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527744921_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527750871_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527779326_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527790738_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527794290_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527800598_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527806668_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527812678_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527818649_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527830557_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527836505_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527842297_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527847588_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527853505_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527859212_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527864918_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527870624_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527880049_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527886261_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527892318_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527898319_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527904286_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527910242_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527916192_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527922132_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527927851_v305.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527933075_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527939098_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527944804_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527961922_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527965769_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527971921_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527977966_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527983959_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527989923_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0527995878_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0528007759_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0528018984_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0528024690_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0528030396_v306.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Reprocess/P305/ft1/gll_ph_p305_r0528036102_v306.fit shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/983569': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J1333.7+5056_weekly_bin477 RA = 203.439, Dec = 50.9366 tmin = 527472001, tmax = 528076801 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='983569', job_status='RUN', time_executed='2021-07-20 20:33:38.650819', time_epoch_executed='1626838418.65' WHERE source_name='4FGL J1333.7+5056' and cadence='weekly' and bin_id='477' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/983569 Creating custom pfile directory: /scratch/kocevski/983569/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=527472001.0 && nMetStart<528076801.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=527472001.0 && nMetStart<528076801.0' /Data/Flight/Level1/LPA Retrieving 107 files... Done. Merging files... [Errno 2] No such file or directory: '/scratch/kocevski/983569/gll_ph_p305_r0527659286_v305.fit' Traceback (most recent call last): File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2835, in sourceAnalysis dataAvailibility_ft1 = dataCatalogQuery(FT1_options, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1938, in dataCatalogQuery FTmerge.ft1merge(dataCatalogFiles_local, mergedFile, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 59, in ft1merge tstart, tstop = _getTimeKeywords(infiles) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 40, in _getTimeKeywords header = pyfits.open(item)[extnum].header File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile lazy_load_hdus=lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper return function(*args, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__ self._open_filename(fileobj, mode, overwrite) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open return open(filename, mode) IOError: [Errno 2] No such file or directory: '/scratch/kocevski/983569/gll_ph_p305_r0527659286_v305.fit' Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=527472001.0 && nMetStart<528076801.0' /Data/Flight/Level1/LPA Retrieving 107 files... Done. Merging files... Merged file saved to: /scratch/kocevski/983569/ft2_4FGL_J1333.7+5056_weekly_bin477.fits UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1626839010.35', time_completed='2021-07-20 20:43:30.350043', job_id='983569' WHERE bin_id='477' AND source_name='4FGL J1333.7+5056' AND cadence='weekly'; Database successfully updated. Error: could not find cmap file: /scratch/kocevski/983569/cmap_HighResolution_527472001_528076801_4FGL_J1333.7+5056_weekly_bin477.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/983569 Analysis Complete. Tue Jul 20 20:43:30 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 983569: <4FGL_J1333.7+5056_weekly_bin477> in cluster Done Job <4FGL_J1333.7+5056_weekly_bin477> was submitted from host by user in cluster at Tue Jul 20 20:30:33 2021 Job was executed on host(s) , in queue , as user in cluster at Tue Jul 20 20:33:07 2021 was used as the home directory. was used as the working directory. Started at Tue Jul 20 20:33:07 2021 Terminated at Tue Jul 20 20:43:31 2021 Results reported at Tue Jul 20 20:43:31 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J1333.7+5056_weekly_bin477 203.439 50.9366 527472001 528076801 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J1333.7+5056 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ Successfully completed. Resource usage summary: CPU time : 21.00 sec. Max Memory : 108 MB Average Memory : 102.00 MB Total Requested Memory : - Delta Memory : - Max Swap : - Max Processes : 4 Max Threads : 9 Run time : 623 sec. Turnaround time : 778 sec. The output (if any) is above this job summary.