/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 32 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0612742456_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0612765209_v001.fit shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/983758': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J1254.2-2205_daily_bin1440 RA = 193.552, Dec = -22.0872 tmin = 612576001, tmax = 612835201 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='983758', job_status='RUN', time_executed='2021-09-06 08:51:41.945024', time_epoch_executed='1630943501.95' WHERE source_name='4FGL J1254.2-2205' and cadence='daily' and bin_id='1440' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/983758 Creating custom pfile directory: /scratch/kocevski/983758/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=612576001.0 && nMetStart<612835201.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=612576001.0 && nMetStart<612835201.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... [Errno 2] No such file or directory: '/scratch/kocevski/983758/gll_ph_p305_r0612742456_v001.fit' Traceback (most recent call last): File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2835, in sourceAnalysis dataAvailibility_ft1 = dataCatalogQuery(FT1_options, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1938, in dataCatalogQuery FTmerge.ft1merge(dataCatalogFiles_local, mergedFile, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 59, in ft1merge tstart, tstop = _getTimeKeywords(infiles) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 40, in _getTimeKeywords header = pyfits.open(item)[extnum].header File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile lazy_load_hdus=lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper return function(*args, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__ self._open_filename(fileobj, mode, overwrite) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open return open(filename, mode) IOError: [Errno 2] No such file or directory: '/scratch/kocevski/983758/gll_ph_p305_r0612742456_v001.fit' Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=612576001.0 && nMetStart<612835201.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... Merged file saved to: /scratch/kocevski/983758/ft2_4FGL_J1254.2-2205_daily_bin1440.fits UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1630943774.14', time_completed='2021-09-06 08:56:14.143779', job_id='983758' WHERE bin_id='1440' AND source_name='4FGL J1254.2-2205' AND cadence='daily'; Database successfully updated. Error: could not find cmap file: /scratch/kocevski/983758/cmap_HighResolution_612576001_612835201_4FGL_J1254.2-2205_daily_bin1440.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/983758 Analysis Complete. Mon Sep 6 08:56:14 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 983758: <4FGL_J1254.2-2205_daily_bin1440> in cluster Done Job <4FGL_J1254.2-2205_daily_bin1440> was submitted from host by user in cluster at Mon Sep 6 08:50:51 2021 Job was executed on host(s) , in queue , as user in cluster at Mon Sep 6 08:50:52 2021 was used as the home directory. was used as the working directory. Started at Mon Sep 6 08:50:52 2021 Terminated at Mon Sep 6 08:56:14 2021 Results reported at Mon Sep 6 08:56:14 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J1254.2-2205_daily_bin1440 193.552 -22.0872 612576001 612835201 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J1254.2-2205 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ Successfully completed. Resource usage summary: CPU time : 15.37 sec. Max Memory : 108 MB Average Memory : 91.00 MB Total Requested Memory : - Delta Memory : - Max Swap : - Max Processes : 4 Max Threads : 9 Run time : 322 sec. Turnaround time : 323 sec. The output (if any) is above this job summary.