aklog: Couldn't determine realm of user:aklog: unknown RPC error (-1765328189) while getting realm /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 22 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/228557': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J1223.9+5000_weekly_bin156 RA = 185.988, Dec = 50.0089 tmin = 333331201, tmax = 333936001 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='228557', job_status='RUN', time_executed='2021-07-19 01:00:05.690835', time_epoch_executed='1626681605.69' WHERE source_name='4FGL J1223.9+5000' and cadence='weekly' and bin_id='156' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/228557 Creating custom pfile directory: /scratch/kocevski/228557/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=333331201.0 && nMetStart<333936001.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=333331201.0 && nMetStart<333936001.0' /Data/Flight/Level1/LPA Retrieving 112 files... Done. Merging files... Checksum keywords updated successfully. Merged file saved to: /scratch/kocevski/228557/ft1_4FGL_J1223.9+5000_weekly_bin156.fits Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=333331201.0 && nMetStart<333936001.0' /Data/Flight/Level1/LPA Retrieving 112 files... Done. Merging files... [Errno 2] No such file or directory: '/scratch/kocevski/228557/gll_pt_r0333351622_v001.fit' Traceback (most recent call last): File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2861, in sourceAnalysis dataAvailibility_ft2 = dataCatalogQuery(FT2_options, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1943, in dataCatalogQuery FTmerge.ft2merge(dataCatalogFiles_local, mergedFile, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 133, in ft2merge tstart, tstop = _getTimeKeywords(infiles_arg) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 40, in _getTimeKeywords header = pyfits.open(item)[extnum].header File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile lazy_load_hdus=lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper return function(*args, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__ self._open_filename(fileobj, mode, overwrite) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open return open(filename, mode) IOError: [Errno 2] No such file or directory: '/scratch/kocevski/228557/gll_pt_r0333351622_v001.fit' UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1626681682.2', time_completed='2021-07-19 01:01:22.202114', job_id='228557' WHERE bin_id='156' AND source_name='4FGL J1223.9+5000' AND cadence='weekly'; Database successfully updated. Error: could not find cmap file: /scratch/kocevski/228557/cmap_HighResolution_333331201_333936001_4FGL_J1223.9+5000_weekly_bin156.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/228557 Analysis Complete. Mon Jul 19 01:01:22 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 228557: <4FGL_J1223.9+5000_weekly_bin156> in cluster Exited Job <4FGL_J1223.9+5000_weekly_bin156> was submitted from host by user in cluster at Mon Jul 19 00:56:01 2021 Job was executed on host(s) , in queue , as user in cluster at Mon Jul 19 00:59:35 2021 was used as the home directory. was used as the working directory. Started at Mon Jul 19 00:59:35 2021 Terminated at Mon Jul 19 01:01:22 2021 Results reported at Mon Jul 19 01:01:22 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J1223.9+5000_weekly_bin156 185.988 50.0089 333331201 333936001 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J1223.9+5000 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ TERM_SWAP: job killed after reaching LSF swap usage limit. Exited with signal termination: 29. Resource usage summary: CPU time : 62.41 sec. Max Memory : 169 MB Average Memory : 122.50 MB Total Requested Memory : - Delta Memory : - Max Swap : 18699 MB Max Processes : 6 Max Threads : 15 Run time : 107 sec. Turnaround time : 321 sec. The output (if any) is above this job summary.