/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 202 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578618982_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578631603_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578637624_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578649555_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578655506_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578661455_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578667303_v000.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578678501_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578684207_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578689912_v002.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578695617_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578701322_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578704846_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578711169_v000.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578717239_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578723250_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578729220_v001.fit Last server error 3011 ('No servers are available to read the file.') Error accessing path/file for root://glast-rdr.slac.stanford.edu//glast/Data/Flight/Level1/LPA/prod/5.7/ft1/gll_ph_p305_r0578752873_v000.fit shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/486026': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J1218.5-0119_daily_bin1309 RA = 184.639, Dec = -1.327 tmin = 578620801, tmax = 578880001 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='486026', job_status='RUN', time_executed='2021-09-05 07:44:17.043081', time_epoch_executed='1630853057.04' WHERE source_name='4FGL J1218.5-0119' and cadence='daily' and bin_id='1309' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/486026 Creating custom pfile directory: /scratch/kocevski/486026/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=578620801.0 && nMetStart<578880001.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=578620801.0 && nMetStart<578880001.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... [Errno 2] No such file or directory: '/scratch/kocevski/486026/gll_ph_p305_r0578618982_v001.fit' Traceback (most recent call last): File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2835, in sourceAnalysis dataAvailibility_ft1 = dataCatalogQuery(FT1_options, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1938, in dataCatalogQuery FTmerge.ft1merge(dataCatalogFiles_local, mergedFile, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 59, in ft1merge tstart, tstop = _getTimeKeywords(infiles) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 36, in _getTimeKeywords header = pyfits.open(infiles[0])[extnum].header File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile lazy_load_hdus=lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper return function(*args, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__ self._open_filename(fileobj, mode, overwrite) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open return open(filename, mode) IOError: [Errno 2] No such file or directory: '/scratch/kocevski/486026/gll_ph_p305_r0578618982_v001.fit' Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=578620801.0 && nMetStart<578880001.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... Merged file saved to: /scratch/kocevski/486026/ft2_4FGL_J1218.5-0119_daily_bin1309.fits UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1630853416.81', time_completed='2021-09-05 07:50:16.812808', job_id='486026' WHERE bin_id='1309' AND source_name='4FGL J1218.5-0119' AND cadence='daily'; Database successfully updated. Error: could not find cmap file: /scratch/kocevski/486026/cmap_HighResolution_578620801_578880001_4FGL_J1218.5-0119_daily_bin1309.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/486026 Analysis Complete. Sun Sep 5 07:50:16 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 486026: <4FGL_J1218.5-0119_daily_bin1309> in cluster Done Job <4FGL_J1218.5-0119_daily_bin1309> was submitted from host by user in cluster at Sun Sep 5 07:40:39 2021 Job was executed on host(s) , in queue , as user in cluster at Sun Sep 5 07:40:40 2021 was used as the home directory. was used as the working directory. Started at Sun Sep 5 07:40:40 2021 Terminated at Sun Sep 5 07:50:17 2021 Results reported at Sun Sep 5 07:50:17 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J1218.5-0119_daily_bin1309 184.639 -1.327 578620801 578880001 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J1218.5-0119 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ Successfully completed. Resource usage summary: CPU time : 13.58 sec. Max Memory : 127 MB Average Memory : 83.37 MB Total Requested Memory : - Delta Memory : - Max Swap : 1750 MB Max Processes : 4 Max Threads : 19 Run time : 577 sec. Turnaround time : 578 sec. The output (if any) is above this job summary.