aklog: Couldn't determine realm of user:aklog: unknown RPC error (-1765328189) while getting realm /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 1 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). number of points = 14587 number of fields = 30 RA_SUN column already exists. File will not be modified. shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/390947': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J0850.0+4855_weekly_bin505 RA = 132.508, Dec = 48.9217 tmin = 544406401, tmax = 545011201 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='390947', job_status='RUN', time_executed='2021-07-14 10:59:01.530988', time_epoch_executed='1626285541.53' WHERE source_name='4FGL J0850.0+4855' and cadence='weekly' and bin_id='505' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/390947 Creating custom pfile directory: /scratch/kocevski/390947/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=544406401.0 && nMetStart<545011201.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=544406401.0 && nMetStart<545011201.0' /Data/Flight/Level1/LPA Retrieving 97 files... Done. Merging files... Checksum keywords updated successfully. Merged file saved to: /scratch/kocevski/390947/ft1_4FGL_J0850.0+4855_weekly_bin505.fits Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=544406401.0 && nMetStart<545011201.0' /Data/Flight/Level1/LPA Retrieving 97 files... Done. Merging files... Merged file saved to: /scratch/kocevski/390947/ft2_4FGL_J0850.0+4855_weekly_bin505.fits Selecting the photons: time -p gtselect infile=/scratch/kocevski/390947/ft1_4FGL_J0850.0+4855_weekly_bin505.fits outfile=/scratch/kocevski/390947/ft1_filteredMKT_4FGL_J0850.0+4855_weekly_bin505.fits ra=132.508 dec=48.9217 rad=12.0 tmin=544406401.0 tmax=545011201.0 emin=100.0 emax=100000.0 zmin=0.0 zmax=90.0 evclass=128 evtype="INDEF" convtype=-1 phasemin=0.0 phasemax=1.0 evtable="EVENTS" chatter=2 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). Done. real 12.69 user 11.91 sys 0.41 No photons survived the gtmktime cut UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No photons survived the gtselect cut', time_epoch_completed='1626285658.51', time_completed='2021-07-14 11:00:58.505654', job_id='390947' WHERE bin_id='505' AND source_name='4FGL J0850.0+4855' AND cadence='weekly'; Database successfully updated. Adding sun position to ft2 file: /nfs/farm/g/glast/g/LCRepository/Repository/bin/sunpos /scratch/kocevski/390947/ft2_4FGL_J0850.0+4855_weekly_bin505.fits Selecting the good time intervals: time -p gtmktime scfile=/scratch/kocevski/390947/ft2_4FGL_J0850.0+4855_weekly_bin505.fits sctable="SC_DATA" filter="IN_SAA!=T && LIVETIME>0 && gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nogrb.gti',(START+STOP)/2) && (angsep(RA_SUN,DEC_SUN,RA_ZENITH,DEC_ZENITH)>115 || gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nosolarflares.gti',(START+STOP)/2))" roicut=no evfile=/scratch/kocevski/390947/ft1_filteredMKT_4FGL_J0850.0+4855_weekly_bin505.fits evtable="EVENTS" outfile="/scratch/kocevski/390947/ft1_filtered_4FGL_J0850.0+4855_weekly_bin505.fits" apply_filter=yes overwrite=yes header_obstimes=yes tstart=0.0 tstop=0.0 gtifile="default" chatter=3 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). This is gtmktime version HEAD Applying GTI filter: IN_SAA!=T && LIVETIME>0 && gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nogrb.gti',(START+STOP)/2) && (angsep(RA_SUN,DEC_SUN,RA_ZENITH,DEC_ZENITH)>115 || gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nosolarflares.gti',(START+STOP)/2)) real 0.56 user 0.38 sys 0.15 No photons survived the gtmktime cut UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No photons survived the gtmktime cut', time_epoch_completed='1626285659.48', time_completed='2021-07-14 11:00:59.481169', job_id='390947' WHERE bin_id='505' AND source_name='4FGL J0850.0+4855' AND cadence='weekly'; Database successfully updated. Generating the livetime cube: time -p gtltcube evfile="/scratch/kocevski/390947/ft1_filtered_4FGL_J0850.0+4855_weekly_bin505.fits" evtable="EVENTS" scfile=/scratch/kocevski/390947/ft2_4FGL_J0850.0+4855_weekly_bin505.fits sctable="SC_DATA" outfile=/scratch/kocevski/390947/ltcube_544406401_545011201_4FGL_J0850.0+4855_weekly_bin505.fits dcostheta=0.025 binsz=1.0 phibins=0 tmin=0.0 tmax=0.0 file_version="1" zmin=0.0 zmax=90.0 chatter=2 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). Working on file /scratch/kocevski/390947/ft2_4FGL_J0850.0+4855_weekly_bin505.fits .....................! real 27.02 user 26.33 sys 0.33 Generating the exposure map: time -p gtexpmap evfile=/scratch/kocevski/390947/ft1_filtered_4FGL_J0850.0+4855_weekly_bin505.fits evtable="EVENTS" scfile=/scratch/kocevski/390947/ft2_4FGL_J0850.0+4855_weekly_bin505.fits sctable="SC_DATA" expcube=/scratch/kocevski/390947/ltcube_544406401_545011201_4FGL_J0850.0+4855_weekly_bin505.fits outfile=/scratch/kocevski/390947/expmap_544406401_545011201_4FGL_J0850.0+4855_weekly_bin505.fits irfs="P8R3_SOURCE_V2" evtype="INDEF" srcrad=30.0 nlong=88 nlat=88 nenergies=10 submap=no nlongmin=0 nlongmax=0 nlatmin=0 nlatmax=0 chatter=2 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). The exposure maps generated by this tool are meant to be used for *unbinned* likelihood analysis only. Do not use them for binned analyses. Computing the ExposureMap using /scratch/kocevski/390947/ltcube_544406401_545011201_4FGL_J0850.0+4855_weekly_bin505.fits .....................! real 192.24 user 185.25 sys 5.76 Error: could not find cmap file: /scratch/kocevski/390947/cmap_HighResolution_544406401_545011201_4FGL_J0850.0+4855_weekly_bin505.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/390947 Analysis Complete. Wed Jul 14 11:04:38 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 390947: <4FGL_J0850.0+4855_weekly_bin505> in cluster Done Job <4FGL_J0850.0+4855_weekly_bin505> was submitted from host by user in cluster at Wed Jul 14 10:55:54 2021 Job was executed on host(s) , in queue , as user in cluster at Wed Jul 14 10:58:51 2021 was used as the home directory. was used as the working directory. Started at Wed Jul 14 10:58:51 2021 Terminated at Wed Jul 14 11:04:39 2021 Results reported at Wed Jul 14 11:04:39 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J0850.0+4855_weekly_bin505 132.508 48.9217 544406401 545011201 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J0850.0+4855 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ Successfully completed. Resource usage summary: CPU time : 303.09 sec. Max Memory : 321 MB Average Memory : 233.69 MB Total Requested Memory : - Delta Memory : - Max Swap : 2621 MB Max Processes : 6 Max Threads : 21 Run time : 348 sec. Turnaround time : 525 sec. The output (if any) is above this job summary.