/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 72 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/153230': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J0806.5+4503_daily_bin651 RA = 121.628, Dec = 45.0605 tmin = 408067201, tmax = 408326401 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='153230', job_status='RUN', time_executed='2021-08-29 03:17:22.310435', time_epoch_executed='1630232242.31' WHERE source_name='4FGL J0806.5+4503' and cadence='daily' and bin_id='651' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/153230 Creating custom pfile directory: /scratch/kocevski/153230/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=408067201.0 && nMetStart<408326401.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=408067201.0 && nMetStart<408326401.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... Checksum keywords updated successfully. Merged file saved to: /scratch/kocevski/153230/ft1_4FGL_J0806.5+4503_daily_bin651.fits Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=408067201.0 && nMetStart<408326401.0' /Data/Flight/Level1/LPA Retrieving 46 files... Done. Merging files... Empty or corrupt FITS file Traceback (most recent call last): File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2861, in sourceAnalysis dataAvailibility_ft2 = dataCatalogQuery(FT2_options, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1943, in dataCatalogQuery FTmerge.ft2merge(dataCatalogFiles_local, mergedFile, verbose=verbose) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 133, in ft2merge tstart, tstop = _getTimeKeywords(infiles_arg) File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 40, in _getTimeKeywords header = pyfits.open(item)[extnum].header File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile lazy_load_hdus=lazy_load_hdus, **kwargs) File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1040, in _readfrom raise IOError('Empty or corrupt FITS file') IOError: Empty or corrupt FITS file UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1630232272.12', time_completed='2021-08-29 03:17:52.117604', job_id='153230' WHERE bin_id='651' AND source_name='4FGL J0806.5+4503' AND cadence='daily'; Database successfully updated. Error: could not find cmap file: /scratch/kocevski/153230/cmap_HighResolution_408067201_408326401_4FGL_J0806.5+4503_daily_bin651.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/153230 Analysis Complete. Sun Aug 29 03:17:52 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 153230: <4FGL_J0806.5+4503_daily_bin651> in cluster Exited Job <4FGL_J0806.5+4503_daily_bin651> was submitted from host by user in cluster at Sun Aug 29 03:15:40 2021 Job was executed on host(s) , in queue , as user in cluster at Sun Aug 29 03:15:41 2021 was used as the home directory. was used as the working directory. Started at Sun Aug 29 03:15:41 2021 Terminated at Sun Aug 29 03:17:52 2021 Results reported at Sun Aug 29 03:17:52 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J0806.5+4503_daily_bin651 121.628 45.0605 408067201 408326401 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J0806.5+4503 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ TERM_SWAP: job killed after reaching LSF swap usage limit. Exited with signal termination: 29. Resource usage summary: CPU time : 41.50 sec. Max Memory : 197 MB Average Memory : 103.57 MB Total Requested Memory : - Delta Memory : - Max Swap : 18706 MB Max Processes : 5 Max Threads : 15 Run time : 131 sec. Turnaround time : 132 sec. The output (if any) is above this job summary.