/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pyfits/__init__.py:22: PyFITSDeprecationWarning: PyFITS is deprecated, please use astropy.io.fits PyFITSDeprecationWarning) # noqa Likelihood Analysis Tool Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov) Waiting 119 seconds before starting... Proceeding. Importing modules... This is make3FGLxml version 01r0. The default diffuse model files and names are for pass 8 and assume you have v10r00p05 of the Fermi Science Tools or higher. This is make4FGLxml version 01r04. The default diffuse model files and names are for pass 8 and 4FGL and assume you have v11r5p3 of the Fermi Science Tools or higher. WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). /nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/matplotlib/cbook/deprecation.py:106: MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead. warnings.warn(message, mplDeprecation, stacklevel=1) WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). number of points = 7515 number of fields = 30 RA_SUN column already exists. File will not be modified. shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory rmdir: failed to remove `/scratch/kocevski/87080': No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Done. Performing analysis on: 4FGL_J0354.7+8009_daily_bin975 RA = 58.6919, Dec = 80.1647 tmin = 492048001, tmax = 492307201 emin = 100.0, emax = 100000.0 irfs = P8R3_SOURCE_V2 ROI = 12 zmax = 90 Fitting strategies: Fix sources to their catalog values = True Leave variable source normalizations free = True Perform pre-fit where ALL sources are frozen to catalog values = False Perform secondary fit with a free spectral index = True Remove all catalog sources = False Remove weak (TS < 2) catalog sources = False Freeze Galactic component = False Likelihood fit parameters: Statistic: UNBINNED Optimizer: MINUIT Catalog: 4FGL Repository Job = True LAT data Source: Data catalog Updating database... UPDATE lightcurve_data_v2 SET job_id='87080', job_status='RUN', time_executed='2021-08-19 19:14:13.901345', time_epoch_executed='1629425653.9' WHERE source_name='4FGL J0354.7+8009' and cadence='daily' and bin_id='975' Database successfully updated. Done. Creating custom output directory: /scratch/kocevski/87080 Creating custom pfile directory: /scratch/kocevski/87080/pfiles/ Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=492048001.0 && nMetStart<492307201.0' /Data/Flight/Reprocess/P305 Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=492048001.0 && nMetStart<492307201.0' /Data/Flight/Level1/LPA Retrieving 47 files... Done. Merging files... Checksum keywords updated successfully. Merged file saved to: /scratch/kocevski/87080/ft1_4FGL_J0354.7+8009_daily_bin975.fits Retrieving the FT1 file... Issuing command: /afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=492048001.0 && nMetStart<492307201.0' /Data/Flight/Level1/LPA Retrieving 47 files... Done. Merging files... Merged file saved to: /scratch/kocevski/87080/ft2_4FGL_J0354.7+8009_daily_bin975.fits Selecting the photons: time -p gtselect infile=/scratch/kocevski/87080/ft1_4FGL_J0354.7+8009_daily_bin975.fits outfile=/scratch/kocevski/87080/ft1_filteredMKT_4FGL_J0354.7+8009_daily_bin975.fits ra=58.6919 dec=80.1647 rad=12.0 tmin=492048001.0 tmax=492307201.0 emin=100.0 emax=100000.0 zmin=0.0 zmax=90.0 evclass=128 evtype="INDEF" convtype=-1 phasemin=0.0 phasemax=1.0 evtable="EVENTS" chatter=2 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). Done. real 10.58 user 3.45 sys 7.08 No photons survived the gtmktime cut UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No photons survived the gtselect cut', time_epoch_completed='1629425737.66', time_completed='2021-08-19 19:15:37.660062', job_id='87080' WHERE bin_id='975' AND source_name='4FGL J0354.7+8009' AND cadence='daily'; Database successfully updated. Adding sun position to ft2 file: /nfs/farm/g/glast/g/LCRepository/Repository/bin/sunpos /scratch/kocevski/87080/ft2_4FGL_J0354.7+8009_daily_bin975.fits Selecting the good time intervals: time -p gtmktime scfile=/scratch/kocevski/87080/ft2_4FGL_J0354.7+8009_daily_bin975.fits sctable="SC_DATA" filter="IN_SAA!=T && LIVETIME>0 && gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nogrb.gti',(START+STOP)/2) && (angsep(RA_SUN,DEC_SUN,RA_ZENITH,DEC_ZENITH)>115 || gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nosolarflares.gti',(START+STOP)/2))" roicut=no evfile=/scratch/kocevski/87080/ft1_filteredMKT_4FGL_J0354.7+8009_daily_bin975.fits evtable="EVENTS" outfile="/scratch/kocevski/87080/ft1_filtered_4FGL_J0354.7+8009_daily_bin975.fits" apply_filter=yes overwrite=yes header_obstimes=yes tstart=0.0 tstop=0.0 gtifile="default" chatter=3 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). This is gtmktime version HEAD Applying GTI filter: IN_SAA!=T && LIVETIME>0 && gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nogrb.gti',(START+STOP)/2) && (angsep(RA_SUN,DEC_SUN,RA_ZENITH,DEC_ZENITH)>115 || gtifilter('/nfs/farm/g/glast/g/LCRepository/Likelihood/GTIs/nosolarflares.gti',(START+STOP)/2)) real 7.06 user 0.32 sys 6.69 No photons survived the gtmktime cut UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No photons survived the gtmktime cut', time_epoch_completed='1629425744.98', time_completed='2021-08-19 19:15:44.979275', job_id='87080' WHERE bin_id='975' AND source_name='4FGL J0354.7+8009' AND cadence='daily'; Database successfully updated. Generating the livetime cube: time -p gtltcube evfile="/scratch/kocevski/87080/ft1_filtered_4FGL_J0354.7+8009_daily_bin975.fits" evtable="EVENTS" scfile=/scratch/kocevski/87080/ft2_4FGL_J0354.7+8009_daily_bin975.fits sctable="SC_DATA" outfile=/scratch/kocevski/87080/ltcube_492048001_492307201_4FGL_J0354.7+8009_daily_bin975.fits dcostheta=0.025 binsz=1.0 phibins=0 tmin=0.0 tmax=0.0 file_version="1" zmin=0.0 zmax=90.0 chatter=2 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). Working on file /scratch/kocevski/87080/ft2_4FGL_J0354.7+8009_daily_bin975.fits .....................! real 18.94 user 11.52 sys 7.37 Generating the exposure map: time -p gtexpmap evfile=/scratch/kocevski/87080/ft1_filtered_4FGL_J0354.7+8009_daily_bin975.fits evtable="EVENTS" scfile=/scratch/kocevski/87080/ft2_4FGL_J0354.7+8009_daily_bin975.fits sctable="SC_DATA" expcube=/scratch/kocevski/87080/ltcube_492048001_492307201_4FGL_J0354.7+8009_daily_bin975.fits outfile=/scratch/kocevski/87080/expmap_492048001_492307201_4FGL_J0354.7+8009_daily_bin975.fits irfs="P8R3_SOURCE_V2" evtype="INDEF" srcrad=30.0 nlong=88 nlat=88 nenergies=10 submap=no nlongmin=0 nlongmax=0 nlatmin=0 nlatmax=0 chatter=2 clobber=yes debug=no gui=no mode="ql" WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41). The exposure maps generated by this tool are meant to be used for *unbinned* likelihood analysis only. Do not use them for binned analyses. Computing the ExposureMap using /scratch/kocevski/87080/ltcube_492048001_492307201_4FGL_J0354.7+8009_daily_bin975.fits .....................! real 198.91 user 185.39 sys 13.18 Error: could not find cmap file: /scratch/kocevski/87080/cmap_HighResolution_492048001_492307201_4FGL_J0354.7+8009_daily_bin975.fits Continuing... Cleaning up... ** Nuclear option initiated! ** rmdir /scratch/kocevski/87080 Analysis Complete. Thu Aug 19 19:19:23 PDT 2021 ------------------------------------------------------------ Sender: LSF System Subject: Job 87080: <4FGL_J0354.7+8009_daily_bin975> in cluster Done Job <4FGL_J0354.7+8009_daily_bin975> was submitted from host by user in cluster at Thu Aug 19 19:10:20 2021 Job was executed on host(s) , in queue , as user in cluster at Thu Aug 19 19:10:22 2021 was used as the home directory. was used as the working directory. Started at Thu Aug 19 19:10:22 2021 Terminated at Thu Aug 19 19:19:24 2021 Results reported at Thu Aug 19 19:19:24 2021 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input /nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J0354.7+8009_daily_bin975 58.6919 80.1647 492048001 492307201 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J0354.7+8009 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False ------------------------------------------------------------ Successfully completed. Resource usage summary: CPU time : 410.00 sec. Max Memory : 309 MB Average Memory : 154.56 MB Total Requested Memory : - Delta Memory : - Max Swap : - Max Processes : 5 Max Threads : 21 Run time : 542 sec. Turnaround time : 544 sec. The output (if any) is above this job summary.