Likelihood Analysis Tool
Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov)


Waiting 140 seconds before starting...
Proceeding.

Importing modules...
Traceback (most recent call last):
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 21, in <module>
    import astropy.io.fits as astro_fits
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/__init__.py", line 116, in <module>
    _check_numpy()
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/__init__.py", line 105, in _check_numpy
    requirement_met = minversion(numpy, __minimum_numpy_version__)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/introspection.py", line 156, in minversion
    from pkg_resources import parse_version
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 36, in <module>
    import email.parser
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/email/parser.py", line 12, in <module>
    from email.feedparser import FeedParser
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/email/feedparser.py", line 27, in <module>
    from email import message
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/email/message.py", line 16, in <module>
    import email.charset
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/email/charset.py", line 13, in <module>
    import email.base64mime
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/email/base64mime.py", line 40, in <module>
    from email.utils import fix_eols
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/email/utils.py", line 29, in <module>
    import urllib
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/urllib.py", line 23, in <module>
    """
KeyboardInterrupt
ustom output directory:
/scratch/kocevski/902732

Creating custom pfile directory:
/scratch/kocevski/902732/pfiles/

Retrieving the FT1 file...

Issuing command:
/afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=630720001.0 && nMetStart<630979201.0' /Data/Flight/Reprocess/P305

Issuing command:
/afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=630720001.0 && nMetStart<630979201.0' /Data/Flight/Level1/LPA

Retrieving 47 files...
Done.


Merging files...

/bin/sh: fmerge: command not found
/bin/sh: fmerge: command not found
[Errno 2] No such file or directory: '/scratch/kocevski/902732/ft1_4FGL_J0343.2-6444_daily_bin1510.fits'
Traceback (most recent call last):
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2835, in sourceAnalysis
    dataAvailibility_ft1 = dataCatalogQuery(FT1_options, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1938, in dataCatalogQuery
    FTmerge.ft1merge(dataCatalogFiles_local, mergedFile, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 73, in ft1merge
    foo = pyfits.open(outfile)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen
    lazy_load_hdus, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile
    lazy_load_hdus=lazy_load_hdus, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom
    fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper
    return function(*args, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__
    self._open_filename(fileobj, mode, overwrite)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename
    self._file = fileobj_open(self.name, IO_FITS_MODES[mode])
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open
    return open(filename, mode)
IOError: [Errno 2] No such file or directory: '/scratch/kocevski/902732/ft1_4FGL_J0343.2-6444_daily_bin1510.fits'


Retrieving the FT1 file...

Issuing command:
/afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=630720001.0 && nMetStart<630979201.0' /Data/Flight/Level1/LPA

Retrieving 47 files...
Done.


Merging files...
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
/bin/sh: fcopy: command not found
Traceback (most recent call last):
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 8597, in <module>
    use4FGL=use4FGL, repositoryJob=repositoryJob, performPrefit=performPrefit, performFreeIndexFit=performFreeIndexFit, verbose=verbose, removeCatalogSources=removeCatalogSources)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2861, in sourceAnalysis
    dataAvailibility_ft2 = dataCatalogQuery(FT2_options, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1943, in dataCatalogQuery
    FTmerge.ft2merge(dataCatalogFiles_local, mergedFile, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 138, in ft2merge
    infiles = UnpaddedFT2Files(infiles_arg, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 126, in __init__
    outfile=outfile, print_command=verbose)            
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/GtApp.py", line 70, in run
    for line in output:
KeyboardInterrupt

------------------------------------------------------------
Sender: LSF System <lsf@bullet0093>
Subject: Job 902732: <4FGL_J0343.2-6444_daily_bin1510> in cluster <slac> Exited

Job <4FGL_J0343.2-6444_daily_bin1510> was submitted from host <rhel6-64a> by user <kocevski> in cluster <slac> at Thu Aug 19 08:32:36 2021
Job was executed on host(s) <bullet0093>, in queue <medium>, as user <kocevski> in cluster <slac> at Thu Aug 19 08:32:46 2021
</u/ki/kocevski> was used as the home directory.
</u/ki/kocevski> was used as the working directory.
Started at Thu Aug 19 08:32:46 2021
Terminated at Thu Aug 19 08:38:38 2021
Results reported at Thu Aug 19 08:38:38 2021

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J0343.2-6444_daily_bin1510 55.8163 -64.7349 630720001 630979201 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J0343.2-6444 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False
------------------------------------------------------------

TERM_ADMIN: job killed by root or an administrator.
Exited with exit code 1.

Resource usage summary:

    CPU time :                                   85.00 sec.
    Max Memory :                                 107 MB
    Average Memory :                             40.08 MB
    Total Requested Memory :                     -
    Delta Memory :                               -
    Max Swap :                                   -
    Max Processes :                              4
    Max Threads :                                19
    Run time :                                   351 sec.
    Turnaround time :                            362 sec.

The output (if any) is above this job summary.


------------------------------------------------------------
Sender: LSF System <lsf@bullet0065>
Subject: Job 903402: <4FGL_J0343.2-6444_daily_bin1510> in cluster <slac> Exited

Job <4FGL_J0343.2-6444_daily_bin1510> was submitted from host <rhel6-64n> by user <kocevski> in cluster <slac> at Thu Aug 19 08:32:59 2021
Job was executed on host(s) <bullet0065>, in queue <medium>, as user <kocevski> in cluster <slac> at Thu Aug 19 08:33:25 2021
</u/ki/kocevski> was used as the home directory.
</u/ki/kocevski> was used as the working directory.
Started at Thu Aug 19 08:33:25 2021
Terminated at Thu Aug 19 08:39:00 2021
Results reported at Thu Aug 19 08:39:00 2021

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J0343.2-6444_daily_bin1510 55.8163 -64.7349 630720001 630979201 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J0343.2-6444 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False
------------------------------------------------------------

TERM_ADMIN: job killed by root or an administrator.
Exited with exit code 1.

Resource usage summary:

    CPU time :                                   8.51 sec.
    Max Memory :                                 18 MB
    Average Memory :                             9.55 MB
    Total Requested Memory :                     -
    Delta Memory :                               -
    Max Swap :                                   -
    Max Processes :                              3
    Max Threads :                                19
    Run time :                                   334 sec.
    Turnaround time :                            361 sec.

The output (if any) is above this job summary.