Likelihood Analysis Tool
Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov)


Waiting 40 seconds before starting...
Proceeding.

Importing modules...
Traceback (most recent call last):
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 21, in <module>
    import astropy.io.fits as astro_fits
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/__init__.py", line 116, in <module>
    _check_numpy()
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/__init__.py", line 105, in _check_numpy
    requirement_met = minversion(numpy, __minimum_numpy_version__)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/introspection.py", line 156, in minversion
    from pkg_resources import parse_version
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3126, in <module>
    @_call_aside
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3110, in _call_aside
    f(*args, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3139, in _initialize_master_working_set
    working_set = WorkingSet._build_master()
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 572, in _build_master
    ws = cls()
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 565, in __init__
    self.add_entry(entry)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 621, in add_entry
    for dist in find_distributions(entry, True):
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1968, in find_on_path
    for dist in factory(fullpath):
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 2038, in distributions_from_metadata
    root, entry, metadata, precedence=DEVELOP_DIST,
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 2495, in from_location
    py_version=py_version, platform=platform, **kw
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 2870, in _reload_version
    md_version = _version_from_file(self._get_metadata(self.PKG_INFO))
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 2459, in _version_from_file
    line = next(iter(version_lines), '')
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 2649, in _get_metadata
    for line in self.get_metadata_lines(name):
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1414, in get_metadata_lines
    return yield_lines(self.get_metadata(name))
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1410, in get_metadata
    value = self._get(self._fn(self.egg_info, name))
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1522, in _get
    with open(path, 'rb') as stream:
KeyboardInterrupt
le "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile
    lazy_load_hdus=lazy_load_hdus, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom
    fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper
    return function(*args, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__
    self._open_filename(fileobj, mode, overwrite)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename
    self._file = fileobj_open(self.name, IO_FITS_MODES[mode])
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open
    return open(filename, mode)
IOError: [Errno 2] No such file or directory: '/scratch/kocevski/903346/ft1_4FGL_J0343.2-6444_daily_bin1486.fits'


Retrieving the FT1 file...

Issuing command:
/afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=624499201.0 && nMetStart<624758401.0' /Data/Flight/Level1/LPA

Retrieving 46 files...
Done.


Merging files...
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[Errno 2] No such file or directory: '/scratch/kocevski/903346/ft2_4FGL_J0343.2-6444_daily_bin1486.fits'
Traceback (most recent call last):
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2861, in sourceAnalysis
    dataAvailibility_ft2 = dataCatalogQuery(FT2_options, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1943, in dataCatalogQuery
    FTmerge.ft2merge(dataCatalogFiles_local, mergedFile, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 153, in ft2merge
    updateTimeKeywords(outfile, tstart, tstop)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 48, in updateTimeKeywords
    foo = pyfits.open(fitsfile)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen
    lazy_load_hdus, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile
    lazy_load_hdus=lazy_load_hdus, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom
    fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper
    return function(*args, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__
    self._open_filename(fileobj, mode, overwrite)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename
    self._file = fileobj_open(self.name, IO_FITS_MODES[mode])
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open
    return open(filename, mode)
IOError: [Errno 2] No such file or directory: '/scratch/kocevski/903346/ft2_4FGL_J0343.2-6444_daily_bin1486.fits'


UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1629387259.62', time_completed='2021-08-19 08:34:19.615203', job_id='903346' WHERE bin_id='1486' AND source_name='4FGL J0343.2-6444' AND cadence='daily';

Database successfully updated.

Error: could not find cmap file: /scratch/kocevski/903346/cmap_HighResolution_624499201_624758401_4FGL_J0343.2-6444_daily_bin1486.fits
Continuing... 

Cleaning up...

** Nuclear option initiated! **
rmdir /scratch/kocevski/903346


Analysis Complete.


Thu Aug 19 08:34:19 PDT 2021


------------------------------------------------------------
Sender: LSF System <lsf@bullet0256>
Subject: Job 903346: <4FGL_J0343.2-6444_daily_bin1486> in cluster <slac> Done

Job <4FGL_J0343.2-6444_daily_bin1486> was submitted from host <rhel6-64n> by user <kocevski> in cluster <slac> at Thu Aug 19 08:32:57 2021
Job was executed on host(s) <bullet0256>, in queue <medium>, as user <kocevski> in cluster <slac> at Thu Aug 19 08:33:16 2021
</u/ki/kocevski> was used as the home directory.
</u/ki/kocevski> was used as the working directory.
Started at Thu Aug 19 08:33:16 2021
Terminated at Thu Aug 19 08:34:20 2021
Results reported at Thu Aug 19 08:34:20 2021

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J0343.2-6444_daily_bin1486 55.8163 -64.7349 624499201 624758401 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J0343.2-6444 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time :                                   13.36 sec.
    Max Memory :                                 109 MB
    Average Memory :                             83.75 MB
    Total Requested Memory :                     -
    Delta Memory :                               -
    Max Swap :                                   -
    Max Processes :                              4
    Max Threads :                                9
    Run time :                                   63 sec.
    Turnaround time :                            83 sec.

The output (if any) is above this job summary.


------------------------------------------------------------
Sender: LSF System <lsf@bullet0054>
Subject: Job 902642: <4FGL_J0343.2-6444_daily_bin1486> in cluster <slac> Exited

Job <4FGL_J0343.2-6444_daily_bin1486> was submitted from host <rhel6-64a> by user <kocevski> in cluster <slac> at Thu Aug 19 08:32:33 2021
Job was executed on host(s) <bullet0054>, in queue <medium>, as user <kocevski> in cluster <slac> at Thu Aug 19 08:32:41 2021
</u/ki/kocevski> was used as the home directory.
</u/ki/kocevski> was used as the working directory.
Started at Thu Aug 19 08:32:41 2021
Terminated at Thu Aug 19 08:38:38 2021
Results reported at Thu Aug 19 08:38:38 2021

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J0343.2-6444_daily_bin1486 55.8163 -64.7349 624499201 624758401 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J0343.2-6444 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False
------------------------------------------------------------

TERM_ADMIN: job killed by root or an administrator.
Exited with exit code 1.

Resource usage summary:

    CPU time :                                   22.29 sec.
    Max Memory :                                 21 MB
    Average Memory :                             10.67 MB
    Total Requested Memory :                     -
    Delta Memory :                               -
    Max Swap :                                   -
    Max Processes :                              3
    Max Threads :                                19
    Run time :                                   356 sec.
    Turnaround time :                            365 sec.

The output (if any) is above this job summary.