Likelihood Analysis Tool
Support Contact: Daniel Kocevski (daniel.kocevski@nasa.gov)


Waiting 203 seconds before starting...
Proceeding.

Importing modules...
Traceback (most recent call last):
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 21, in <module>
    import astropy.io.fits as astro_fits
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/__init__.py", line 116, in <module>
    _check_numpy()
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/__init__.py", line 100, in _check_numpy
    import numpy
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/numpy/__init__.py", line 165, in <module>
    from . import polynomial
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/numpy/polynomial/__init__.py", line 15, in <module>
    """
KeyboardInterrupt
olkits.axes_grid1 and mpl_toolkits.axisartist provies the same functionality instead.
  warnings.warn(message, mplDeprecation, stacklevel=1)

WARNING: version mismatch between CFITSIO header (v3.43) and linked library (v3.41).

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
rmdir: failed to remove `/scratch/kocevski/902538': No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Done.


Performing analysis on: 4FGL_J0343.2-6444_daily_bin1046
RA = 55.8163, Dec = -64.7349
tmin = 510451201, tmax = 510710401
emin = 100.0, emax = 100000.0
irfs = P8R3_SOURCE_V2
ROI = 12
zmax = 90

Fitting strategies:
Fix sources to their catalog values = True
Leave variable source normalizations free = True
Perform pre-fit where ALL sources are frozen to catalog values = False
Perform secondary fit with a free spectral index = True
Remove all catalog sources = False
Remove weak (TS < 2) catalog sources = False
Freeze Galactic component = False

Likelihood fit parameters:
Statistic: UNBINNED
Optimizer: MINUIT

Catalog: 4FGL

Repository Job = True

LAT data Source:
Data catalog

Updating database...

UPDATE lightcurve_data_v2 SET job_id='902538', job_status='RUN', time_executed='2021-08-19 08:36:55.909385', time_epoch_executed='1629387415.91' WHERE source_name='4FGL J0343.2-6444' and cadence='daily' and bin_id='1046'

Database successfully updated.
Done.

Creating custom output directory:
/scratch/kocevski/902538

Creating custom pfile directory:
/scratch/kocevski/902538/pfiles/

Retrieving the FT1 file...

Issuing command:
/afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStop>=510451201.0 && nMetStart<510710401.0' /Data/Flight/Reprocess/P305

Issuing command:
/afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT1 --filter 'nMetStart>564945418 && nMetStop>=510451201.0 && nMetStart<510710401.0' /Data/Flight/Level1/LPA

Retrieving 47 files...
Done.


Merging files...

/bin/sh: fmerge: command not found
/bin/sh: fmerge: command not found
[Errno 2] No such file or directory: '/scratch/kocevski/902538/ft1_4FGL_J0343.2-6444_daily_bin1046.fits'
Traceback (most recent call last):
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2835, in sourceAnalysis
    dataAvailibility_ft1 = dataCatalogQuery(FT1_options, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1938, in dataCatalogQuery
    FTmerge.ft1merge(dataCatalogFiles_local, mergedFile, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 73, in ft1merge
    foo = pyfits.open(outfile)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen
    lazy_load_hdus, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile
    lazy_load_hdus=lazy_load_hdus, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom
    fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper
    return function(*args, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__
    self._open_filename(fileobj, mode, overwrite)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename
    self._file = fileobj_open(self.name, IO_FITS_MODES[mode])
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open
    return open(filename, mode)
IOError: [Errno 2] No such file or directory: '/scratch/kocevski/902538/ft1_4FGL_J0343.2-6444_daily_bin1046.fits'


Retrieving the FT1 file...

Issuing command:
/afs/slac.stanford.edu/g/glast/ground/bin/datacat find --group FT2 --filter 'nMetStop>=510451201.0 && nMetStart<510710401.0' /Data/Flight/Level1/LPA

Retrieving 47 files...
Done.


Merging files...
[Errno 2] No such file or directory: '/scratch/kocevski/902538/gll_pt_p202_r0510677520_v001.fit'
Traceback (most recent call last):
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 2861, in sourceAnalysis
    dataAvailibility_ft2 = dataCatalogQuery(FT2_options, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py", line 1943, in dataCatalogQuery
    FTmerge.ft2merge(dataCatalogFiles_local, mergedFile, verbose=verbose)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 133, in ft2merge
    tstart, tstop = _getTimeKeywords(infiles_arg)
  File "/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/FTmerge.py", line 40, in _getTimeKeywords
    header = pyfits.open(item)[extnum].header
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 148, in fitsopen
    lazy_load_hdus, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 402, in fromfile
    lazy_load_hdus=lazy_load_hdus, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/hdu/hdulist.py", line 1006, in _readfrom
    fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/utils/decorators.py", line 508, in wrapper
    return function(*args, **kwargs)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 150, in __init__
    self._open_filename(fileobj, mode, overwrite)
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/file.py", line 506, in _open_filename
    self._file = fileobj_open(self.name, IO_FITS_MODES[mode])
  File "/nfs/farm/g/glast/g/LCRepository/bin/miniconda2/envs/fermitools_v1.0.5/lib/python2.7/site-packages/astropy/io/fits/util.py", line 395, in fileobj_open
    return open(filename, mode)
IOError: [Errno 2] No such file or directory: '/scratch/kocevski/902538/gll_pt_p202_r0510677520_v001.fit'


UPDATE lightcurve_data_v2 SET job_status='DONE', comment='No available data', time_epoch_completed='1629387514.21', time_completed='2021-08-19 08:38:34.212048', job_id='902538' WHERE bin_id='1046' AND source_name='4FGL J0343.2-6444' AND cadence='daily';

Database successfully updated.

Error: could not find cmap file: /scratch/kocevski/902538/cmap_HighResolution_510451201_510710401_4FGL_J0343.2-6444_daily_bin1046.fits
Continuing... 

Cleaning up...

** Nuclear option initiated! **
rmdir /scratch/kocevski/902538


Analysis Complete.


Thu Aug 19 08:38:34 PDT 2021


------------------------------------------------------------
Sender: LSF System <lsf@bullet0126>
Subject: Job 902538: <4FGL_J0343.2-6444_daily_bin1046> in cluster <slac> Exited

Job <4FGL_J0343.2-6444_daily_bin1046> was submitted from host <rhel6-64n> by user <kocevski> in cluster <slac> at Thu Aug 19 08:32:30 2021
Job was executed on host(s) <bullet0126>, in queue <medium>, as user <kocevski> in cluster <slac> at Thu Aug 19 08:32:37 2021
</u/ki/kocevski> was used as the home directory.
</u/ki/kocevski> was used as the working directory.
Started at Thu Aug 19 08:32:37 2021
Terminated at Thu Aug 19 08:38:36 2021
Results reported at Thu Aug 19 08:38:36 2021

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/nfs/farm/g/glast/g/LCRepository/Likelihood/Scripts/LikelihoodAnalysis.py 4FGL_J0343.2-6444_daily_bin1046 55.8163 -64.7349 510451201 510710401 irfs=P8R3_SOURCE_V2 zmax=90 ROI=12 association=4FGL_J0343.2-6444 fixedModel=True performFreeIndexFit=True freeVariableSources=True nuke=True repositoryJob=True verbose=False
------------------------------------------------------------

TERM_ADMIN: job killed by root or an administrator.
Exited with signal termination: 14.

Resource usage summary:

    CPU time :                                   209.24 sec.
    Max Memory :                                 108 MB
    Average Memory :                             62.14 MB
    Total Requested Memory :                     -
    Delta Memory :                               -
    Max Swap :                                   -
    Max Processes :                              5
    Max Threads :                                19
    Run time :                                   358 sec.
    Turnaround time :                            366 sec.

The output (if any) is above this job summary.